Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_I17
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040... 121 5e-28
03_02_0926 + 12448032-12448231,12448727-12448815,12449956-124500... 105 4e-23
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280... 85 8e-17
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 40 0.003
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 31 0.74
06_01_0931 + 7192519-7194075 31 1.3
05_01_0192 + 1394342-1396645 30 1.7
11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604 29 5.2
07_03_1107 - 24024387-24024497,24025799-24026410 29 5.2
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972... 28 9.2
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 28 9.2
>10_08_0180 +
15502809-15503312,15503399-15503454,15503934-15504053,
15504190-15504260,15504603-15504696,15504772-15504978,
15505406-15505657,15505781-15505889,15506112-15506179,
15506278-15506347,15506429-15506503,15506600-15506691,
15506779-15506860
Length = 599
Score = 121 bits (292), Expect = 5e-28
Identities = 60/137 (43%), Positives = 82/137 (59%), Gaps = 7/137 (5%)
Frame = -1
Query: 502 IHRAAGPFLQAECDSIGGCPTGDAKVTGGYNLPAKYIIHTVGPQ------DGSAEKLESC 341
+H AAG L EC ++GGC TG AK+T Y+LPA+ +IHTVGP+ + L C
Sbjct: 153 LHAAAGSGLAEECSTLGGCRTGMAKMTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHC 212
Query: 340 YEKCLSFQQEYQIKSIAFPCISTGIYGFPNRLAAHIALRTARKFLE-TNTEMNRIIFCTF 164
Y CL E ++SIA CI T +P AAH+A+RT R+FLE +++ ++FCT
Sbjct: 213 YRSCLELLIENGLESIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKSKIAGVVFCTV 272
Query: 163 LPIDVEIYETLMQLYFP 113
D EIY+ L+ LYFP
Sbjct: 273 SSSDTEIYKRLLPLYFP 289
>03_02_0926 +
12448032-12448231,12448727-12448815,12449956-12450096,
12450181-12450283,12450386-12450481,12450580-12450654,
12450754-12450823,12451028-12451111
Length = 285
Score = 105 bits (252), Expect = 4e-23
Identities = 58/137 (42%), Positives = 80/137 (58%), Gaps = 10/137 (7%)
Frame = -1
Query: 553 VNAANSRLKAGGGVDGAIHRAAGPFLQAECDSI----GG--CPTGDAKVTGGYNLPAKYI 392
VNAAN R+ GGGVDGAIHR AGP L C + G CPTG+A++T + LP +
Sbjct: 128 VNAANERMLGGGGVDGAIHRTAGPELVEACRKVPEVKSGVRCPTGEARITPAFKLPVSRV 187
Query: 391 IHTVGP---QDGSAE-KLESCYEKCLSFQQEYQIKSIAFPCISTGIYGFPNRLAAHIALR 224
IHTVGP D E L + Y L ++ I+ IA P IS G+Y +P + A+ IA+
Sbjct: 188 IHTVGPIYDMDKQPEVSLNNAYTNSLKLAKQNGIQYIALPAISCGVYRYPPKEASKIAVS 247
Query: 223 TARKFLETNTEMNRIIF 173
TA++F E++ ++F
Sbjct: 248 TAQRFSNDIKEVHFVLF 264
>03_01_0359 -
2805094-2805175,2805256-2805347,2805443-2805517,
2805582-2805675,2805769-2805872,2806777-2806885,
2807397-2807609,2808170-2808289,2809060-2809115,
2809210-2809287,2809374-2809733
Length = 460
Score = 84.6 bits (200), Expect = 8e-17
Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 6/99 (6%)
Frame = -1
Query: 604 RVSIFKGDITKLEIDAIVNAANSRLKAGGGVDGAIHRAAGPFLQAECDSIGGCPTGDAKV 425
++ +++G LE+DA+VN+ N L G +H AAGP L EC ++GGC TG AK+
Sbjct: 98 KICLWRGHPWNLEVDAVVNSTNENLDEAHSSPG-LHAAAGPGLAEECTTLGGCRTGMAKM 156
Query: 424 TGGYNLPAKYIIHTVGPQ------DGSAEKLESCYEKCL 326
T Y+LPA+ +IHTVGP+ + L CY CL
Sbjct: 157 TNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCL 195
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Frame = -1
Query: 604 RVSIFKGDITKLE------IDAIVNAANSRLK-AGGGVDGAIHRAAGPFLQ 473
R F GDIT+L+ + I NAAN RLK GGGV+ AI+ AAG LQ
Sbjct: 345 RFFTFVGDITQLQSKGGLRCNVIANAANWRLKPGGGGVNAAIYNAAGEDLQ 395
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 31.5 bits (68), Expect = 0.74
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Frame = +3
Query: 417 PPVTLASPVGHPPIESHSACKKGPAARCMAPSTP---PPAFSLELAAFTI--ASISSLVM 581
PP P HPP H + P AP P PP + FT A++S +M
Sbjct: 227 PPSPHRHPAAHPPPPPHHPAPRPPPPMAAAPRQPAALPPVPGATVVPFTTMQAAVSRNMM 286
Query: 582 SPLKIET 602
L + T
Sbjct: 287 ESLSVPT 293
>06_01_0931 + 7192519-7194075
Length = 518
Score = 30.7 bits (66), Expect = 1.3
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +3
Query: 348 SSFSADPSWGPTVWMIYLAGKL*PPVTLASPVGHPPIESHS-ACKKGPAARCMAPSTPPP 524
SSF+ADP P ++ ++G L +A PV PP ++ AC + C A + PP
Sbjct: 25 SSFTADP---PAEFLCPISGTL-----MADPVVVPPGQTFERACIQA----CAALAFSPP 72
Query: 525 AFSLELAAFTIASISSLVMSP 587
A + +L++ ++ S LV+ P
Sbjct: 73 AVAADLSSLPPSASSPLVLVP 93
>05_01_0192 + 1394342-1396645
Length = 767
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 453 PIESHSACKKGPAARCMAPSTPPPAFSLELAAFTIASISSLVMSP 587
P S S+ K P+ R PS+PPP + AA AS++ ++ SP
Sbjct: 247 PTSSSSSPSK-PSPRMATPSSPPPEAPVSSAAPPPASLNPMLPSP 290
>11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604
Length = 259
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 450 PPIESHSACKKGPAARCMAPSTPPPAFSLELA 545
PP + HS KG AP+ PP LEL+
Sbjct: 139 PPFKKHSIFFKGLFGTAPAPAPAPPLLELELS 170
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +3
Query: 426 TLASPVGHPPIESHSACKKGPAARCMAPSTPPPAFSLELAAFTIASISSLVMSPLKIETR 605
T +P PP +S A P A A +TPPPA S + A + S +P I T+
Sbjct: 79 TTPAPTKAPPTKSTKAPAPAPKA---AKATPPPASSPPVEAPVASPPSPAAEAPATIPTK 135
>09_02_0475 +
9724676-9724936,9725518-9726216,9726273-9726596,
9726900-9727847
Length = 743
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 183 LFISVLVSRNFLAVRSAMCAARRFGK--P*IPVDIHGKAIDFIWYSCWND 326
+FI LVSR+FL + + + K P + +HG DF+ Y +D
Sbjct: 410 MFIEALVSRSFLQIVNTSLVTEKKCKNPPPTILKVHGLVYDFLRYIAADD 459
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +3
Query: 420 PVTLASPVGHPPIESHSACKKGPAARCMAPSTPPPAFSLELAAFTIASISSLVMSPLKIE 599
P A P P + +GP A P PPP+ A +A S+ V P ++
Sbjct: 145 PFGTAPPPSQGPFAASVPPSQGPFASAQPPFRPPPSLVQSPTASGMAPPSAYVRPPPPVQ 204
Query: 600 TR 605
++
Sbjct: 205 SQ 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,449,122
Number of Sequences: 37544
Number of extensions: 387504
Number of successful extensions: 1372
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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