Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_I17
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-4|CAA97408.1|  203|Caenorhabditis elegans Hypothetical pr...   161   5e-40
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    28   6.2  

>Z73102-4|CAA97408.1|  203|Caenorhabditis elegans Hypothetical
           protein B0035.3 protein.
          Length = 203

 Score =  161 bits (391), Expect = 5e-40
 Identities = 88/163 (53%), Positives = 102/163 (62%), Gaps = 8/163 (4%)
 Frame = -1

Query: 604 RVSIFKGDITKLEIDAIVNAANSRLKAGGGVDGAIHRAAG-PFLQAECDSIGGCPTGDAK 428
           R+S++ GDITKL +DAIVNAANSRL  GGGVDGAIHRAAG   LQ EC    GC  GDA 
Sbjct: 25  RISVWDGDITKLSVDAIVNAANSRLAGGGGVDGAIHRAAGRKQLQEECQQYNGCAVGDAV 84

Query: 427 VTGGYNL-PAKYIIHTVGPQ------DGSAEKLESCYEKCLSFQQEYQIKSIAFPCISTG 269
           +T G N+   K IIHTVGPQ      D   E L +CY   L    E  +KSIAF CISTG
Sbjct: 85  ITSGCNINHIKKIIHTVGPQVYGNVTDERRENLVACYRTSLDIAIENGMKSIAFCCISTG 144

Query: 268 IYGFPNRLAAHIALRTARKFLETNTEMNRIIFCTFLPIDVEIY 140
           +YG+PN  AA        ++LE N  + RI+  TFL ID E Y
Sbjct: 145 VYGYPNDDAAKTVTNFLTEYLEKNDTIERIVLVTFLDIDNEHY 187


>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 15
            protein.
          Length = 1217

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 490  AGPFLQAECDSIGGCPTGDAKVTGGYNLP 404
            AGP +Q   +  GG P    KVT G N+P
Sbjct: 1126 AGPMIQQGKNIAGGYPPNQNKVTPGKNVP 1154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,359,305
Number of Sequences: 27780
Number of extensions: 347629
Number of successful extensions: 955
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)