Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_I16
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    38   0.001
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    26   2.4  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    26   3.1  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   4.2  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   5.5  
SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   7.3  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    24   9.6  

>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = -3

Query: 330 LVDPQQSLREECSQKPXAQNMWAKYQECNDRVNSR---SXTAETCEEELIDYVHVLDKCV 160
           + DP + + +EC   P  + +   ++EC  RV  +      +E C EE     H    C 
Sbjct: 146 ITDPLEKMTQECMDAPDCKEVKHHFEECTARVTKKVEQGDKSEDCIEEFFHLYHCARDCA 205

Query: 159 TKDLFKRL 136
              +FK L
Sbjct: 206 DPKVFKVL 213


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +1

Query: 109 KV*IFNSLL*PLKQVLGDAFVKNMDIVNEFFFTGFCSXRSGVYTII 246
           +V +   L+ PL   LG  F++++  + + + TG+C+ +  V+ II
Sbjct: 382 RVNLDTQLIDPLPCNLGLIFLESLSEIGQIY-TGYCNRQDSVFKII 426


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 453 NEFGRPMKTFXKNRGCCVIVKDKMSD 376
           N F   + TF   + C + ++DK SD
Sbjct: 252 NNFSEYLATFCSKKSCIITIQDKDSD 277


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 163 AFVKNMDIVNEFFFTGFCSXRSGVYTII 246
           A +KN D VN  ++       SGV TI+
Sbjct: 51  AVIKNFDEVNRMYYIQVVGNLSGVITIV 78


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 53  Y*NYTPNKITDVASMILKL 109
           Y NYTPN + D+ + IL L
Sbjct: 334 YKNYTPNALVDLIARILAL 352


>SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 96

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 438 PMKTFXKNRGCCVIVKDKMSDKFV 367
           P + F K   CC++ K +  D+FV
Sbjct: 52  PKQPFFKLLDCCILYKLQTEDRFV 75


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 59  NYTPNKITDVASMILKLRFKFSIHYFSLLNKSLVTHLSRTWT 184
           NY  N +  V S + +++  F IH   L   +LV HL RT T
Sbjct: 487 NYE-NPVRRVRSFVAEIQ-TFDIHGPILSGSTLVLHLGRTVT 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,185
Number of Sequences: 5004
Number of extensions: 24185
Number of successful extensions: 48
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)