Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_I14
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.6  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.6  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.6  
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.0  

>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 563 GLRVVDASVMPTITSGNTYAPVV 495
           G+R++D S  P   SGN Y+PVV
Sbjct: 316 GIRLID-STKPEANSGNVYSPVV 337


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 563 GLRVVDASVMPTITSGNTYAPVV 495
           G+R++D S  P+  SGN Y+PVV
Sbjct: 236 GIRLID-SANPSSNSGNVYSPVV 257


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 563 GLRVVDASVMPTITSGNTYAPVV 495
           G+R++D S  P+  SGN Y+PVV
Sbjct: 236 GIRLID-SANPSSNSGNVYSPVV 257


>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 280 PLSQAFLVGVDVVSMMIDCNY 342
           P  Q +LVG D +  ++DC Y
Sbjct: 121 PREQVYLVGFDTLIRILDCKY 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,658
Number of Sequences: 5004
Number of extensions: 43540
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)