Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_I14
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 40 0.003
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 37 0.015
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 36 0.026
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 36 0.035
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 33 0.32
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 32 0.56
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 32 0.56
02_04_0656 - 24769069-24770814,24771552-24771608,24773307-247735... 29 3.0
05_02_0033 + 5847754-5847982,5848308-5848437,5849038-5849116,584... 28 9.2
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = -1
Query: 671 YALNLASTQYHTVGTCAMGDKDIGVVDSRLRVHGVTGLRVVDASVMPTITSGNTYAPVVM 492
Y ++ T +H G C +G VVD RV GV GLRV+D+S N A V+M
Sbjct: 515 YCMDTVMTIWHYHGGCHVG----AVVDDDYRVFGVQGLRVIDSSTFKYSPGTNPQATVMM 570
Query: 491 I 489
+
Sbjct: 571 L 571
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 37.1 bits (82), Expect = 0.015
Identities = 24/61 (39%), Positives = 29/61 (47%)
Frame = -1
Query: 671 YALNLASTQYHTVGTCAMGDKDIGVVDSRLRVHGVTGLRVVDASVMPTITSGNTYAPVVM 492
Y T +H G C +G VVD RV GV GLRVVD+S N A V+M
Sbjct: 514 YCRETVMTIWHYHGGCHVG----AVVDQDYRVLGVRGLRVVDSSTFKYSPGTNPQATVMM 569
Query: 491 I 489
+
Sbjct: 570 L 570
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 36.3 bits (80), Expect = 0.026
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = -1
Query: 650 TQYHTVGTCAMGDKDIGVVDSRLRVHGVTGLRVVDASVMPTITSGNTYAPVVMI 489
T +H G C +G VVD + RV GV+GLRV+D S + N A V+M+
Sbjct: 531 TIWHYHGGCHVGK----VVDQQYRVIGVSGLRVIDGSTLFRSPGTNPQATVMMM 580
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 35.9 bits (79), Expect = 0.035
Identities = 24/62 (38%), Positives = 31/62 (50%)
Frame = -1
Query: 650 TQYHTVGTCAMGDKDIGVVDSRLRVHGVTGLRVVDASVMPTITSGNTYAPVVMIAEKAAD 471
T +H G C +G VVD + RV GV+G+RVVD S N A V+M+
Sbjct: 517 TIWHYHGGCHVGK----VVDQQHRVLGVSGVRVVDGSTFSRSPGTNPQATVMMMGRYFGV 572
Query: 470 MI 465
MI
Sbjct: 573 MI 574
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 32.7 bits (71), Expect = 0.32
Identities = 24/71 (33%), Positives = 32/71 (45%)
Frame = -1
Query: 650 TQYHTVGTCAMGDKDIGVVDSRLRVHGVTGLRVVDASVMPTITSGNTYAPVVMIAEKAAD 471
T +H G C + VVD+ RV GV LRV+D S N A V+M+
Sbjct: 519 TIWHYHGGCQVNR----VVDAEYRVIGVDALRVIDGSTFNASPGTNPQATVMMLGRYMG- 573
Query: 470 MIKIDHGHLEN 438
+KI + L N
Sbjct: 574 -VKIQNERLGN 583
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 31.9 bits (69), Expect = 0.56
Identities = 23/69 (33%), Positives = 29/69 (42%)
Frame = -1
Query: 653 STQYHTVGTCAMGDKDIGVVDSRLRVHGVTGLRVVDASVMPTITSGNTYAPVVMIAEKAA 474
+T +H G C G VVD RV V LRVVD S N A ++M+
Sbjct: 514 ATLWHYHGGCVAGS----VVDRDFRVFRVRALRVVDGSTFRETPGTNPQATIMMMGRYIG 569
Query: 473 DMIKIDHGH 447
+ ID H
Sbjct: 570 QKM-IDERH 577
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 31.9 bits (69), Expect = 0.56
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = -1
Query: 650 TQYHTVGTCAMGDKDIGVVDSRLRVHGVTGLRVVDASVMPTITSGNTYAPVVMI 489
T +H G C +G VVD RV G+ LRV+D S N A V+M+
Sbjct: 512 TIWHYHGGCQVGR----VVDRDYRVLGIEALRVIDGSTFNASPGTNPQATVMML 561
>02_04_0656 -
24769069-24770814,24771552-24771608,24773307-24773582,
24773675-24773965
Length = 789
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 641 HTVGTCAMG-DKDIGVVDSRLRVHGVTGLRVVDASVMPTITSGNTYAPVVMIA 486
H +G+C MG G VD+R L V D SV+PT N + +A
Sbjct: 721 HHMGSCRMGATAGDGAVDARGESWEAERLYVCDGSVLPTAVGVNPMITIQSVA 773
>05_02_0033 +
5847754-5847982,5848308-5848437,5849038-5849116,
5849194-5849251,5849732-5850795,5850899-5851003,
5851369-5851473
Length = 589
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 593 LPPLYLYRPWRKSLRYGTV 649
LPP Y+ + W + RYGT+
Sbjct: 375 LPPHYILKRWTQEARYGTI 393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,645,576
Number of Sequences: 37544
Number of extensions: 254304
Number of successful extensions: 537
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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