Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_I14
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical pr... 68 6e-12
Z78540-3|CAB01735.2| 482|Caenorhabditis elegans Hypothetical pr... 28 6.2
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 28 6.2
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 28 6.2
>Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical
protein C34C6.4 protein.
Length = 599
Score = 68.1 bits (159), Expect = 6e-12
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Frame = -1
Query: 656 ASTQYHTVGTCAMG---DKDIGVVDSRLRVHGVTGLRVVDASVMPTITSGNTYAPVVMIA 486
A++ YH TC MG DK V + V+G L+VVDASVMP+I SGN APV+M+A
Sbjct: 515 AASAYHPSCTCKMGSENDKMAVVNPETMGVYGTENLKVVDASVMPSIVSGNLNAPVIMMA 574
Query: 485 EKAADMIK 462
E+AAD+IK
Sbjct: 575 ERAADLIK 582
>Z78540-3|CAB01735.2| 482|Caenorhabditis elegans Hypothetical
protein C33G3.5 protein.
Length = 482
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 22 DS*IRQVPPSDSIVFYKVSPELHSEIHNSFS 114
D+ IRQVP D FY++SP SE+ N+F+
Sbjct: 28 DATIRQVPIYDGSKFYEMSP---SEMENAFT 55
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 538 TLASTTRRPVTP*TLNLESTTPISLSPMA 624
T +TT RP TP +TTP++ +P+A
Sbjct: 300 TPLATTSRPTTPSPTTPRATTPLATTPLA 328
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 538 TLASTTRRPVTP*TLNLESTTPISLSPMAQVPT 636
T+ ST P TP T+ TTP + + M PT
Sbjct: 177 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 209
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 538 TLASTTRRPVTP*TLNLESTTPISLSPMAQVPT 636
T+ ST P TP T+ TTP + + M PT
Sbjct: 190 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 222
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 538 TLASTTRRPVTP*TLNLESTTPISLSPMAQVPT 636
T+ ST P TP T+ TTP + + M PT
Sbjct: 203 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 235
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 538 TLASTTRRPVTP*TLNLESTTPISLSPMAQVPT 636
T+ ST P TP T+ TTP + + M PT
Sbjct: 216 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 248
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 538 TLASTTRRPVTP*TLNLESTTPISLSPMAQVPT 636
T+ ST P TP T+ TTP + + M PT
Sbjct: 229 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 261
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 538 TLASTTRRPVTP*TLNLESTTPISLSPMAQVPT 636
T+ ST P TP T+ TTP + + M PT
Sbjct: 242 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 274
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 538 TLASTTRRPVTP*TLNLESTTPISLSPMAQVPT 636
T+ ST P TP T+ TTP + + M PT
Sbjct: 255 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 287
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 538 TLASTTRRPVTP*TLNLESTTPISLSPMAQVPT 636
T+ ST P TP T+ TTP + + M PT
Sbjct: 291 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 323
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 538 TLASTTRRPVTP*TLNLESTTPISLSPMAQVPT 636
T+ ST P TP T+ TTP + + M PT
Sbjct: 304 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 336
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 538 TLASTTRRPVTP*TLNLESTTPISLSPMAQVPT 636
T+ ST P TP T+ TTP + + M PT
Sbjct: 317 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 349
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 538 TLASTTRRPVTP*TLNLESTTPISLSPMAQVPT 636
T+ ST P TP T+ TTP + + M PT
Sbjct: 330 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 362
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 538 TLASTTRRPVTP*TLNLESTTPISLSPMAQVPT 636
T+ ST P TP T+ TTP + + M PT
Sbjct: 343 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 375
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 538 TLASTTRRPVTP*TLNLESTTPISLSPMAQVPT 636
T+ ST P TP T+ TTP + + M PT
Sbjct: 356 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 388
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 538 TLASTTRRPVTP*TLNLESTTPISLSPMAQVPT 636
T+ ST P TP T+ TTP + + M PT
Sbjct: 369 TMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 401
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,898,537
Number of Sequences: 27780
Number of extensions: 241096
Number of successful extensions: 748
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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