Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_I12
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    27   3.6  
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.7  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   6.2  

>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 522 LNKRSEILFLF*FDTRHFLFIYCVRFKTFLITINICQN 635
           L   +E+ F+F  DTR    +YC   K   IT +I +N
Sbjct: 165 LKLANELEFIFFHDTRGKFSVYCSSSKDDAITFSINRN 202


>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +2

Query: 428 ITLNDYYLNFIV*SQKEPDKKQNKTVICV*AIK*KIRDFISILI*HTPFFIYLLCPF*NL 607
           ITL   ++ FI  +   PD + +KT+  V ++    R     L+ HT     LLC   N 
Sbjct: 96  ITLRAGFVEFI--NALVPDLRVSKTIFHVLSVNWSARVIEQTLLHHTDLTADLLCVHAND 153

Query: 608 FNYN 619
           F+++
Sbjct: 154 FDFD 157


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 7    HERRERLVLLNLTSIITSKKXYXYISSLFKSSRGARRLLGLSTKTR 144
            HER + L  +NL ++I  K+   Y  S+  SSR  R    L+   R
Sbjct: 1495 HERFKILAGINLCNLIYLKRYIKYAFSISDSSRPIREKKPLTLLNR 1540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,804
Number of Sequences: 5004
Number of extensions: 45594
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)