Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_I12
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0502 + 3749431-3749640                                           30   1.6  
01_06_0339 + 28549449-28549529,28549768-28549914,28550027-285500...    29   4.9  
01_01_0407 - 3067071-3070085                                           28   6.5  

>07_01_0502 + 3749431-3749640
          Length = 69

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 114 APAWPIHEDTFRNETLT--STKQGLILCVHHKGHKYGEGCASNIIDLHG 254
           APA  +  +  R+++    S++QG  L V H G +YGEG  S  +D HG
Sbjct: 8   APAPRVFTEKVRSKSAAAVSSRQGGALLVDHAGVRYGEGDVS--LDGHG 54


>01_06_0339 +
           28549449-28549529,28549768-28549914,28550027-28550094,
           28550771-28550828,28551474-28551584,28551668-28551718,
           28552308-28552451,28552570-28552665,28552781-28552852,
           28553392-28553475
          Length = 303

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 105 WGAAPAWPIHEDTFRNETLTSTKQGLILCVH 197
           +G A AW    D F   TL++   G +LCVH
Sbjct: 130 YGNANAWRYCTDVFDYLTLSAIINGTVLCVH 160


>01_01_0407 - 3067071-3070085
          Length = 1004

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +1

Query: 238 LLIYMASFTGKLNSQILN 291
           LL+Y  SF+GK+ SQILN
Sbjct: 425 LLLYNCSFSGKIPSQILN 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,967,486
Number of Sequences: 37544
Number of extensions: 256495
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)