Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_I08
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0116 - 934801-934949,935745-935854,935930-936055,936439-93...    28   6.6  

>08_01_0116 -
           934801-934949,935745-935854,935930-936055,936439-936526,
           936638-936758,936848-936926,937093-937156,937240-937445,
           937676-937715,937748-938009
          Length = 414

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +3

Query: 99  LYIAAISLNPISPRTKSIYRYQPIHDIARCDAHRHIGPIRESKSIFRYQPIHDIARY-DA 275
           +YI  +   P+  + +S Y Y+P H     + + +      ++ +  Y    D+A Y  A
Sbjct: 273 VYIGCMKSGPVVDKNESKY-YEPDHWKFGTEGNNYFR--HATRQL--YAVTRDLATYISA 327

Query: 276 HRHIVPIR*YQQYSFGSYRIG 338
           +RHI+     +  SFGS+ IG
Sbjct: 328 NRHILHKYSNEDVSFGSWLIG 348


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,327,928
Number of Sequences: 37544
Number of extensions: 257854
Number of successful extensions: 482
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)