Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_I08
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical pr...    33   0.16 
AL117193-10|CAB60304.1|  337|Caenorhabditis elegans Hypothetical...    29   2.6  
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr...    28   4.5  
U13070-13|AAC46637.2|  248|Caenorhabditis elegans Hypothetical p...    28   5.9  
AC006832-5|AAF39998.1|  513|Caenorhabditis elegans Hypothetical ...    28   5.9  

>Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical
           protein F32H2.1b protein.
          Length = 928

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 190 MRIAISDRFVNRNLY--FDISRYTILLDMMRIGISFRFVNISNIRLVR-IESARVSERTI 360
           M I +SD   N   Y  F     +ILL+ MR+GI+    +    RLVR +   R  +   
Sbjct: 770 MHIGLSDEVTNSKEYANFYARMRSILLEPMRLGIARESSSDETKRLVRCLAEERACDEEQ 829

Query: 361 GISCDE*NRNR 393
            ++CD+  R R
Sbjct: 830 QVTCDQIRRRR 840


>Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical
           protein F32H2.1a protein.
          Length = 944

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 190 MRIAISDRFVNRNLY--FDISRYTILLDMMRIGISFRFVNISNIRLVR-IESARVSERTI 360
           M I +SD   N   Y  F     +ILL+ MR+GI+    +    RLVR +   R  +   
Sbjct: 770 MHIGLSDEVTNSKEYANFYARMRSILLEPMRLGIARESSSDETKRLVRCLAEERACDEEQ 829

Query: 361 GISCDE*NRNR 393
            ++CD+  R R
Sbjct: 830 QVTCDQIRRRR 840


>AL117193-10|CAB60304.1|  337|Caenorhabditis elegans Hypothetical
           protein Y105C5A.17 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = +1

Query: 178 LLDVMRIAISDRFVNRNLYFDISRYTILLDMMR--IGISFRFVNISNIRLVRIESARVSE 351
           +L V+ I +  +     L+  I +     +M R  I IS  + ++ N+ L    ++ VS 
Sbjct: 245 VLSVIYINVFRKLFQYFLHISILKQIANENMFRPIIAISHAY-SVQNMILQNTVNSTVSS 303

Query: 352 RTIGISCDE*NRNRHYPYNCK 414
           ++  I C++    R+ P+NCK
Sbjct: 304 KSNKIMCEKTQMLRNLPFNCK 324


>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform a protein.
          Length = 1595

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -1

Query: 371  HDIPIVRSLTLADSIRTKRILLILTNRNDMPMRIISSN-IVYRLISKYRFRFT 216
            H + + R+++L ++I     +  +  R+D PM I SSN +V  +IS Y  + T
Sbjct: 1455 HSLRMNRAVSLPNAISNAGQINGVEKRSDTPMSISSSNSMVTSIISPYNDKLT 1507


>U13070-13|AAC46637.2|  248|Caenorhabditis elegans Hypothetical
           protein F01F1.3 protein.
          Length = 248

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = -1

Query: 311 LLILTNRNDMPMRIISSNIVYRLISKYRFRFTNRSDMAMRITSSNIVYRLISIY 150
           +L+  +++D     +SSN++  L++ YR R + R+D   R+   N V  L S+Y
Sbjct: 60  ILMHIHKSDPKDISLSSNVLALLLNDYRNRLSVRND--SRLMFRNCVKTLFSMY 111


>AC006832-5|AAF39998.1|  513|Caenorhabditis elegans Hypothetical
           protein ZK355.1 protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 318 TNIADINESERYADAHHIEQY-RVSADIEI 232
           TN+   N ++ YAD HH+    R+  DIEI
Sbjct: 226 TNLNMTNITDNYADLHHLSSVRRLRGDIEI 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,407,839
Number of Sequences: 27780
Number of extensions: 255562
Number of successful extensions: 554
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)