Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_I07
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1352 - 25961782-25962318,25963607-25963810                       29   2.8  
06_01_0867 - 6600847-6601413,6601954-6602181                           28   8.4  

>07_03_1352 - 25961782-25962318,25963607-25963810
          Length = 246

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 145 IFQLSSSNYNQYHQINHSTTKSNYNISH*FF 237
           IFQ    N   YH ++H    S YN S  FF
Sbjct: 186 IFQSLFQNNTAYHDVHHQLQGSKYNYSQPFF 216


>06_01_0867 - 6600847-6601413,6601954-6602181
          Length = 264

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +1

Query: 91  FFLSDCVYNTIKEYGC---VP--IFQLSSSNYNQYHQINHSTTKSNYNISH*FF 237
           FF S     T+ ++ C   +P  I  +  SN + YH I+H    + YN S  FF
Sbjct: 173 FFFSFATIKTVDDH-CGLWLPGNILHVFFSNNSAYHDIHHQLYGNKYNFSQPFF 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,562,091
Number of Sequences: 37544
Number of extensions: 239475
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)