Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_I07
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039053-4|AAC25876.1|  304|Caenorhabditis elegans Serpentine re...    29   4.3  
Z49911-3|CAA90126.2|  735|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AF039053-4|AAC25876.1|  304|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 24 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +2

Query: 119 RSKNTVVYLYFNFLLATIINTTKLTIPLLKVTI 217
           R KN +V  YF FLL  I   T  TI LL + I
Sbjct: 38  RRKNDMVLFYFRFLLDVIFGATS-TIYLLSIII 69


>Z49911-3|CAA90126.2|  735|Caenorhabditis elegans Hypothetical
           protein M28.4 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 136 CVPIFQLSSSNYNQYHQINHSTTKSNYNISH*FFGALY 249
           CVP FQ    NY  +H I+ S  ++N  + +   G L+
Sbjct: 420 CVPTFQ--DDNYTMFHSIHVSINRTNGPLDYLNIGKLF 455


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,870,116
Number of Sequences: 27780
Number of extensions: 254936
Number of successful extensions: 601
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)