Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_I06
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   7.2  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    25   9.5  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.5  

>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 92  LSGHISAGTRVNGIIIVSLRTSETKVGEFTRKNPANFCL 208
           ++ H S+   VN  II+   +SE K     +KN  N CL
Sbjct: 239 ITTHCSSPRFVNRCIILYFSSSEDKSDCLAKKNYVNKCL 277


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 560 KIYTTAPVYQPGVVKLKCSFKSLI 631
           K+Y    + QP V K++C+F S +
Sbjct: 113 KLYLQFLMKQPNVTKIRCTFNSAL 136


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 204 QKFAGFFLVNSPTLVSDVRNETIMIPFTRVPAEICPERNNIGCYLICKVLIDNSN 40
           Q  + F   N PT+  D+RN +I +   + P       N+IG   I   L+D+SN
Sbjct: 523 QSTSSFSRYNQPTVSVDLRNSSI-LRRAQEPVNGSTGENHIGDDYISS-LLDSSN 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,002
Number of Sequences: 5004
Number of extensions: 47078
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)