Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_I03
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 146 1e-35
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 39 0.005
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 38 0.006
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 36 0.025
03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871 35 0.076
03_02_0750 + 10909130-10909616,10912257-10912916,10913139-109135... 31 0.93
05_07_0290 + 29016410-29018920 29 3.8
12_02_0578 - 20753834-20754418 29 5.0
04_04_1296 + 32437089-32437386,32437422-32437429 29 5.0
12_02_1275 - 27482784-27483272 28 6.6
12_02_1215 + 27070164-27070302,27070308-27071098 28 6.6
12_02_0981 - 25027336-25027596,25028017-25028361,25028681-250288... 28 6.6
06_01_0837 - 6355315-6355342,6356185-6356361,6356579-6356662,635... 28 6.6
03_05_0358 - 23438416-23439282,23440116-23440163,23440343-234403... 28 6.6
09_04_0350 + 16899076-16900164 28 8.7
08_01_0810 - 7857946-7858422 28 8.7
01_06_0945 + 33217310-33217427,33218820-33219433 28 8.7
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 28 8.7
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 146 bits (355), Expect = 1e-35
Identities = 71/202 (35%), Positives = 118/202 (58%), Gaps = 4/202 (1%)
Frame = -3
Query: 675 TAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDY 496
T + P T +++I +K+ G ++A DT SYGS R++ R+ V L+G G++
Sbjct: 359 TQRTQYPYVTGSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIKAVGKHSLIGASGEF 418
Query: 495 ADFQYLKDIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD 316
+DFQ + + + + + DG L P+ +H +LTRV+YN+R+K DPLWNS V+ G++
Sbjct: 419 SDFQEILRYLDELTLSDHMWDDGNSLGPKEVHSYLTRVMYNRRNKFDPLWNSLVIGGVKK 478
Query: 315 G----EPFLGAVDKLGTAYEDAVISNGLGAYMATPLLRDAVDKGPLDQETAIAVVRKSME 148
G E +LG V+ +GT +E+ I+ G G +MA P+LR + + E A+ +V K +
Sbjct: 479 GPKGEEKYLGMVNMIGTHFEENHIATGFGNHMAIPILRTEW-REDMTFEEAVKLVEKCLL 537
Query: 147 VLFYRDARAFQRYQLGVVTV*G 82
VL YRD + ++Q+ +T G
Sbjct: 538 VLLYRDRSSINKFQIAKITTEG 559
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 38.7 bits (86), Expect = 0.005
Identities = 40/200 (20%), Positives = 84/200 (42%)
Frame = -3
Query: 654 ITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 475
+ T TT++G+ F G V+ DT + G + ++C ++ + I G AD + +
Sbjct: 35 LKTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 94
Query: 474 DIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQDGEPFLGA 295
D++ ++ R G + + + L L++ + + + V+ G+ P L
Sbjct: 95 DMVSSQLQLHR-YATGRESRVVTSLTLLKSHLFSYQGHVSA---ALVLGGVDVTGPHLHT 150
Query: 294 VDKLGTAYEDAVISNGLGAYMATPLLRDAVDKGPLDQETAIAVVRKSMEVLFYRDARAFQ 115
V G+ + G G+ A + +G L +E I +V +++ + D +
Sbjct: 151 VYPHGSTDTLPFATMGSGSLAAMSVFESKYKEG-LTREEGIQLVAEAIRGGIFNDLGSGS 209
Query: 114 RYQLGVVTV*GNKDHRRGAQ 55
+ V+T G ++ R Q
Sbjct: 210 NVDVCVITK-GKTEYLRNHQ 228
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = -3
Query: 642 TTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQ 463
TT++GV +D G V+A D+ S G R ++ ++ D + + G AD Q + D ++
Sbjct: 26 TTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYVR 85
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 36.3 bits (80), Expect = 0.025
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = -3
Query: 642 TTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQ 463
TT++GV +D G V+A D+ S G R ++ ++ D + + G AD Q + + ++
Sbjct: 26 TTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYVR 85
>03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871
Length = 212
Score = 34.7 bits (76), Expect = 0.076
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 1/194 (0%)
Frame = -3
Query: 636 VIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQQK 457
VIGV V+A DT L D +VM ++ L+G G+ D + I QK
Sbjct: 4 VIGVVGRDFAVVAADTSAVQSILVHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFI-QK 62
Query: 456 IIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI-QDGEPFLGAVDKLG 280
+ + + L + TR + +P + + ++AG D L +D +
Sbjct: 63 NLHLYQFRNNIPLSTAAT-ANFTRGELATALRKNPYYVNVLLAGYDSDVGASLYYIDYIA 121
Query: 279 TAYEDAVISNGLGAYMATPLLRDAVDKGPLDQETAIAVVRKSMEVLFYRDARAFQRYQLG 100
T ++ + G G+Y L+ D + + + E A+ +V K ++ + R A Q + +
Sbjct: 122 TFHKIEKGAFGYGSYFCLSLM-DKLYRPDMSVEEAVDLVDKCIKEIRLRLVVAPQNFIIK 180
Query: 99 VVTV*GNKDHRRGA 58
+V G +++ R A
Sbjct: 181 IVDKEGAREYARRA 194
>03_02_0750 +
10909130-10909616,10912257-10912916,10913139-10913544,
10914376-10914757,10914918-10915679,10916106-10916165,
10916695-10917105
Length = 1055
Score = 31.1 bits (67), Expect = 0.93
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 300 RERVHHPEY-RQPHSCSRGDPSCSSCCRGHESTSSAENG 413
R ++HP Y R+P SCS G C CCR + G
Sbjct: 208 RALLNHPNYARRPRSCS-GCVMCGGCCRRRGGAGAGGGG 245
>05_07_0290 + 29016410-29018920
Length = 836
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Frame = -3
Query: 549 PRVMKVNDLILLGC-GGDYADFQYL-----KDIIQQKIID-----ERCVGDGLQLKPRSL 403
P V+ LI C G+Y D Y KD +Q ++ C G LQ K + L
Sbjct: 426 PNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKEL 485
Query: 402 HCWLTRVLYN 373
HC+ R Y+
Sbjct: 486 HCFALRRAYD 495
>12_02_0578 - 20753834-20754418
Length = 194
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = -3
Query: 225 PLLRDAVDK-----GPLDQETAIAVVRKSMEVLFYRDARAFQRYQ-LGV 97
PL R AVD P+D+ + +A+V S +F R R F+R + LGV
Sbjct: 78 PLRRVAVDPVRRSASPVDRRSTVALVIPSRAAVFLRSVRRFRRLRCLGV 126
>04_04_1296 + 32437089-32437386,32437422-32437429
Length = 101
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 183 LGPEVLYPLRPSVEESPCKLLARSRSQHLHRLFPIYQQLRERVHHPEYRQ 332
LGPE + P S ++P +LL R ++HL + RER H + Q
Sbjct: 33 LGPESMQPA--SAMQAPPQLLLRYSNRHLRNAVAVPAYERERESHLDAEQ 80
>12_02_1275 - 27482784-27483272
Length = 162
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 574 PVRAQCVTGDNTSLVKLNSDDSCGGRDGAR 663
P R + V G T L + ++ D GGR GAR
Sbjct: 61 PARYRLVEGSETGLAQRSAADDSGGRLGAR 90
>12_02_1215 + 27070164-27070302,27070308-27071098
Length = 309
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 574 PVRAQCVTGDNTSLVKLNSDDSCGGRDGAR 663
P R + V G T L + ++ D GGR GAR
Sbjct: 224 PARHRLVEGSETGLAQRSAADDSGGRLGAR 253
>12_02_0981 -
25027336-25027596,25028017-25028361,25028681-25028827,
25028906-25029970
Length = 605
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 498 YADFQYLKDIIQQKIIDERCVGD----GLQLKPRSLHCWLTRVLY 376
+AD++ L D +++D V D G PR LH W R LY
Sbjct: 42 HADWRGLPDAAVSRVLDRLPVVDLFRLGYLFSPRWLHIWRARPLY 86
>06_01_0837 -
6355315-6355342,6356185-6356361,6356579-6356662,
6356989-6357542,6358086-6358322
Length = 359
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -3
Query: 546 RVMKVNDLILLGCGGDYADFQYLKDIIQQKI 454
RVM V+DL+LLG YAD ++ ++ + K+
Sbjct: 48 RVMMVSDLMLLGSDATYAD-RFFRNHVMSKL 77
>03_05_0358 -
23438416-23439282,23440116-23440163,23440343-23440382,
23440459-23440610
Length = 368
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 580 RAQCVTGDNTSLVKLNSDDSCGGRDGAR 663
R + V G TSL + + DS GGR GAR
Sbjct: 208 RHRLVEGSETSLAQRGTADSSGGRLGAR 235
>09_04_0350 + 16899076-16900164
Length = 362
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 574 PVRAQCVTGDNTSLVKLNSDDSCGGRDGAR 663
P R + V G T L + + D GGR GAR
Sbjct: 299 PTRHRLVEGSETGLAQRGAADGSGGRLGAR 328
>08_01_0810 - 7857946-7858422
Length = 158
Score = 27.9 bits (59), Expect = 8.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -1
Query: 650 RPPQLSSELSLTRDVLSPVTHWARTGHWP 564
+PP +S ++ + + +L + W R G WP
Sbjct: 31 KPPVVSKKVPMPQVLLDYILSWTRMGPWP 59
>01_06_0945 + 33217310-33217427,33218820-33219433
Length = 243
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2
Query: 124 RVPTLPARRGHG 89
R+PTLP RRGHG
Sbjct: 87 RLPTLPGRRGHG 98
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 144 APPYFYVQPQ*QFLGPEVLYPLRPSVE 224
APP F ++PQ + P V YP+ SV+
Sbjct: 720 APPMFNLRPQMKLNQPGVSYPMHESVD 746
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,170,063
Number of Sequences: 37544
Number of extensions: 457745
Number of successful extensions: 1612
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1611
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -