Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_I03
(725 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical pr... 140 1e-33
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 34 0.12
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 34 0.12
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 31 1.1
U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 29 2.6
AL132841-2|CAB60332.1| 469|Caenorhabditis elegans Hypothetical ... 29 2.6
AF005206-1|AAB61749.1| 105|Caenorhabditis elegans DAF-3 protein. 29 2.6
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 3.4
Z82055-10|CAB04848.2| 659|Caenorhabditis elegans Hypothetical p... 29 4.5
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 28 5.9
AC084155-1|AAG23361.2| 352|Caenorhabditis elegans Hypothetical ... 28 5.9
U42438-4|AAM75371.1| 617|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 28 7.8
>Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical
protein F39H11.5 protein.
Length = 236
Score = 140 bits (338), Expect = 1e-33
Identities = 74/206 (35%), Positives = 125/206 (60%), Gaps = 10/206 (4%)
Frame = -3
Query: 681 DFTAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGG 502
D + +P T T+VI +++ G V+ D + SYG +AR+++ R KVND +L+ GG
Sbjct: 5 DEVQRTLNPTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGG 64
Query: 501 DYADFQYLKDIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI 322
D+ADF +L+++I+++++ + + P++LH +LT +LY KR KM+P+WN+ VVAG+
Sbjct: 65 DHADFHWLQNVIERQVLLWKRFDQ--DIGPKALHGYLTSLLYAKRCKMNPVWNTLVVAGV 122
Query: 321 QDGE--------PFLGAVDKLGTAYEDAVISNGLGAYMATPLLRDAVDK--GPLDQETAI 172
++ E PF+G + + G AY+ I+ GLGA++ + D K L +E A
Sbjct: 123 EEEEKNNKETSTPFIGVITQKGCAYQVKHIATGLGAFLLNQAVEDEWRKKGEDLSREEAE 182
Query: 171 AVVRKSMEVLFYRDARAFQRYQLGVV 94
AV+RKS+E+ Y D A +++G V
Sbjct: 183 AVLRKSLELTLYHDCVADNEFEIGRV 208
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 33.9 bits (74), Expect = 0.12
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
Frame = -3
Query: 648 TTTTVIGVKFDKGCVIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKD 472
+T + G F ++A DT + + RD ++ +ND I+L G Y D LK
Sbjct: 53 STCAISGENF---AIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109
Query: 471 IIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD-GEPFLGA 295
++Q ++ R + L+R LY +R P + ++AGI + G+ + +
Sbjct: 110 VLQSRLHKYR-FDYRSDMSVDLCAELLSRNLYYRR--FFPYYTGAILAGIDEHGKGAVFS 166
Query: 294 VDKLGTAYEDAVISNGLGAYMATPLL 217
D +G ++G M P L
Sbjct: 167 YDPIGCIERLGYSASGAAEPMIIPFL 192
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 33.9 bits (74), Expect = 0.12
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
Frame = -3
Query: 648 TTTTVIGVKFDKGCVIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKD 472
+T + G F ++A DT + + RD ++ +ND I+L G Y D LK
Sbjct: 53 STCAISGENF---AIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109
Query: 471 IIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD-GEPFLGA 295
++Q ++ R + L+R LY +R P + ++AGI + G+ + +
Sbjct: 110 VLQSRLHKYR-FDYRSDMSVDLCAELLSRNLYYRR--FFPYYTGAILAGIDEHGKGAVFS 166
Query: 294 VDKLGTAYEDAVISNGLGAYMATPLL 217
D +G ++G M P L
Sbjct: 167 YDPIGCIERLGYSASGAAEPMIIPFL 192
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/82 (30%), Positives = 36/82 (43%)
Frame = -3
Query: 717 ASTIAPSRHGVQDFTAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVM 538
AST +P Q A A + T+I ++ G V+ D L S L PR+
Sbjct: 12 ASTFSPDGRIFQVEYAQKA--VDNAGTMIAIRGKNGVVVVADKLIS-SKLYTDNANPRMF 68
Query: 537 KVNDLILLGCGGDYADFQYLKD 472
VND + + G+Y D LK+
Sbjct: 69 NVNDNVGVAVAGNYPDGFALKN 90
>U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform b protein.
Length = 864
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 307 GFTILNTGNHIAVPEGIHLAPLVVEDTSQPAVQRTGLELE 426
GF +LN GN VP+ H + +T+ +QR+G+++E
Sbjct: 60 GFNLLNVGNMANVPDE-HTPMMSPVNTTTKILQRSGIKME 98
>AL132841-2|CAB60332.1| 469|Caenorhabditis elegans Hypothetical
protein Y15E3A.4 protein.
Length = 469
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 307 GFTILNTGNHIAVPEGIHLAPLVVEDTSQPAVQ 405
GF + +TG +AVP +HLA ++ + +Q
Sbjct: 283 GFAVNHTGYFVAVPRALHLAFKIISGVASDRIQ 315
>AF005206-1|AAB61749.1| 105|Caenorhabditis elegans DAF-3 protein.
Length = 105
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 307 GFTILNTGNHIAVPEGIHLAPLVVEDTSQPAVQRTGLELE 426
GF +LN GN VP+ H + +T+ +QR+G+++E
Sbjct: 60 GFNLLNVGNMANVPDE-HTPMMSPVNTTTKILQRSGIKME 98
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/64 (23%), Positives = 25/64 (39%)
Frame = +3
Query: 258 SQHLHRLFPIYQQLRERVHHPEYRQPHSCSRGDPSCSSCCRGHESTSSAENGA*AGDHLQ 437
+ H H P + ++ HH + + S S S SS S+SS+ + +
Sbjct: 82 THHAHGAHPGHHEVHHHHHHVKAQDSSSSSSSSSSSSSSSSSSSSSSSSSSSESEDEKHH 141
Query: 438 HSAH 449
H H
Sbjct: 142 HKKH 145
>Z82055-10|CAB04848.2| 659|Caenorhabditis elegans Hypothetical
protein T26H2.7 protein.
Length = 659
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 207 LRPSVEESPCKLLARSRSQHLHRLFPIY 290
L+ S +ESPC L+ S+ L R+ P+Y
Sbjct: 54 LQRSDQESPCSLVTLFYSKRLKRILPLY 81
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 703 SIQARCTGFYSSLSEPHHDHHNCH 632
S + T SS+S P H HH CH
Sbjct: 344 STERTATTATSSVSTPKHPHHGCH 367
>AC084155-1|AAG23361.2| 352|Caenorhabditis elegans Hypothetical
protein Y45G5AM.6 protein.
Length = 352
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 330 QPHSCSRGDPSCSSCCRGHESTSSAENGA 416
Q CS +P+C S C GH GA
Sbjct: 115 QCRECSEKNPNCGSSCEGHWCHEDMSTGA 143
>U42438-4|AAM75371.1| 617|Caenorhabditis elegans Hypothetical
protein C09G4.2c protein.
Length = 617
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 391 QPAVQRTGLELETISNTALINDFLLN-DILQILKIS 495
+P + ++ ETI N +N FL N D QI KIS
Sbjct: 50 RPIIGKSDAAFETIGNALRLNSFLRNLDATQIEKIS 85
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -1
Query: 203 IKDLWTKKLLLRLYVKVWRCFSTEMLARSNATSSAWSRSEGIKITDEELKHDWSLAHM 30
I D+ TKK++ + + + +T + A ++ T S W +E D E +W A +
Sbjct: 485 ISDVSTKKIISKREINIPNFQNTIVTASTSGTISVWDYTEKDVREDLERSRNWQEAEI 542
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,313,379
Number of Sequences: 27780
Number of extensions: 367870
Number of successful extensions: 1239
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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