Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_I03
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           24   1.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.0  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 149 RCFSTEMLARSNATSSAWSRSEGIKITDEEL 57
           RC +   +A  +   + W++SEG +++ EEL
Sbjct: 15  RCVTKAAIAGHDG--NLWAKSEGFEVSKEEL 43


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 703 SIQARCTGFYSSLSEPHH 650
           S ++ C+G  +SL+E HH
Sbjct: 495 STESTCSGEVASLTEYHH 512


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 389 VNQQCRERGLSWRPSPTQ 442
           V ++C ERG+ + P P +
Sbjct: 766 VQKKCEERGILFMPIPNR 783


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 143  STSILLRTTAIAVSWSRGPLSTAS 214
            +T   L +  I +SW   PLS A+
Sbjct: 1088 TTCTTLTSQTIRISWMSPPLSAAN 1111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,305
Number of Sequences: 438
Number of extensions: 3973
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)