Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_I02
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1210 + 9749166-9749358,9750783-9751110,9752171-9752375           29   1.3  
03_04_0167 + 17936598-17936763,17938735-17938831,17938919-179390...    28   3.1  
12_01_0960 + 9554658-9554761,9554948-9555014,9555558-9555590,955...    27   5.3  
05_03_0649 - 16566815-16567392,16567491-16567623,16568000-165687...    27   7.1  
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    27   9.3  

>01_01_1210 + 9749166-9749358,9750783-9751110,9752171-9752375
          Length = 241

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +3

Query: 228 TVRLQQRVLTLHVVSQTALHLVLEVASVRIRDAVCEVGVIAGPGDGHKGKDNDELHEH 401
           TV      L+ +  SQ   H V     + +   +C VGV+      H G D   LHEH
Sbjct: 177 TVMTSLVALSFYGASQIKFHWVERYDKILVGSVLCLVGVLTYVFHHHDG-DEHSLHEH 233


>03_04_0167 +
           17936598-17936763,17938735-17938831,17938919-17939027,
           17939125-17939163,17939655-17939768,17939886-17939947,
           17940691-17940793,17942111-17942260,17942693-17942761,
           17942840-17942896,17942966-17943226,17946154-17946222,
           17946374-17946475,17947200-17947270,17947375-17947578,
           17947848-17947941,17948350-17948646
          Length = 687

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 213 DRPASTVRLQQRVLTLHVVSQTALHLVLEVASVRIRDAVCEVGV 344
           D+  S   LQ  ++ L   +Q++L ++ +   VR RD+ C V +
Sbjct: 206 DQKRSNDALQMELMRLKEQTQSSLKVIQKFYDVRCRDSECSVNI 249


>12_01_0960 +
           9554658-9554761,9554948-9555014,9555558-9555590,
           9555676-9555729,9555914-9555930,9556881-9556980
          Length = 124

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 348 AGPGDGHKGKDNDELHEHFSSYC 416
           A P D  KG +N  L EH+   C
Sbjct: 30  AAPSDWFKGTENPPLQEHYKGVC 52


>05_03_0649 -
           16566815-16567392,16567491-16567623,16568000-16568765,
           16569242-16569260,16569320-16569367,16569401-16569506
          Length = 549

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 333 EVGVIAGPGDGHKGKDNDELHEHFSSYC 416
           ++G+  G G GH  + +D+L +  S +C
Sbjct: 20  QLGISGGGGGGHGARRDDQLVQECSGFC 47


>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 245 ASTDPSRCLPDGSPPGS*SRQCKDPRR 325
           A+  P    P GSPP   S  C +P+R
Sbjct: 113 AAAQPEMSWPRGSPPRCPSSSCPEPQR 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,818,421
Number of Sequences: 37544
Number of extensions: 162734
Number of successful extensions: 574
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)