Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_I02
(454 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 1.2
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 4.7
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 21 8.3
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 21 8.3
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 21 8.3
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 21 8.3
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 21 8.3
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 21 8.3
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 21 8.3
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 21 8.3
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 21 8.3
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 8.3
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 8.3
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 23.4 bits (48), Expect = 1.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 219 PASTVRLQQRVLTLHVVSQTALHLVLEVASVRIR 320
PAS + Q++L H++S T L ++ S+ ++
Sbjct: 67 PASGIHQMQQLLQQHILSPTQLQSFMQQHSLYLQ 100
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.4 bits (43), Expect = 4.7
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 344 YSNFAYSVADPYTGDFKNQVESRLGDNVKGQY 249
YS+F Y ++ + E L D++K QY
Sbjct: 959 YSSFLYKSSESSCNPDQKPTEYLLEDSMKQQY 990
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 8.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -3
Query: 68 YNGYFPYNYKGIFY 27
YN Y +NY ++Y
Sbjct: 98 YNNYNKHNYNKLYY 111
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 8.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -3
Query: 68 YNGYFPYNYKGIFY 27
YN Y +NY ++Y
Sbjct: 98 YNNYNKHNYNKLYY 111
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 8.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -3
Query: 68 YNGYFPYNYKGIFY 27
YN Y +NY ++Y
Sbjct: 98 YNNYNKHNYNKLYY 111
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 8.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -3
Query: 68 YNGYFPYNYKGIFY 27
YN Y +NY ++Y
Sbjct: 98 YNNYNKHNYNKLYY 111
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 8.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -3
Query: 68 YNGYFPYNYKGIFY 27
YN Y +NY ++Y
Sbjct: 98 YNNYNKHNYNKLYY 111
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 8.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -3
Query: 68 YNGYFPYNYKGIFY 27
YN Y +NY ++Y
Sbjct: 98 YNNYNKHNYNKLYY 111
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 8.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -3
Query: 68 YNGYFPYNYKGIFY 27
YN Y +NY ++Y
Sbjct: 98 YNNYNKHNYNKLYY 111
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 8.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -3
Query: 68 YNGYFPYNYKGIFY 27
YN Y +NY ++Y
Sbjct: 98 YNNYNKHNYNKLYY 111
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 8.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -3
Query: 68 YNGYFPYNYKGIFY 27
YN Y +NY ++Y
Sbjct: 98 YNNYNKHNYNKLYY 111
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 20.6 bits (41), Expect = 8.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -3
Query: 68 YNGYFPYNYKGIFY 27
YN Y +NY ++Y
Sbjct: 331 YNNYNKHNYNKLYY 344
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 20.6 bits (41), Expect = 8.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -3
Query: 68 YNGYFPYNYKGIFY 27
YN Y +NY ++Y
Sbjct: 331 YNNYNKHNYNKLYY 344
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,089
Number of Sequences: 438
Number of extensions: 1423
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -