Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_H23
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   118   5e-28
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|...    28   1.2  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    27   1.6  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    27   2.1  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   3.6  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    26   3.6  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   6.3  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   8.4  
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...    25   8.4  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  118 bits (285), Expect = 5e-28
 Identities = 53/89 (59%), Positives = 64/89 (71%)
 Frame = -1

Query: 331 LVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSV 152
           LV +M+SGPV  M+WEG   VKTGR MLGA+NP DS PGTIRGD  I +GRN+ HGSDS+
Sbjct: 63  LVGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSI 122

Query: 151 ESAKKEIGLWFTDKEVVGWTPANENWVYE 65
           ESA +EI LWF   E+  +    E W+YE
Sbjct: 123 ESANREIKLWFQPSEIQVYDRTIEPWIYE 151



 Score = 76.2 bits (179), Expect = 3e-15
 Identities = 32/57 (56%), Positives = 45/57 (78%)
 Frame = -3

Query: 509 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFF 339
           E+TFI VKPD VQRGL+G II +FE KG+KL  LKF+ PS +L+++HY++   +PF+
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFY 60


>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -1

Query: 376 SNTTAIWHPGLSSPGLVK--YMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRG 203
           SNT  +     SS  LVK  Y+SS           +   + +++   T+ +   PGTI  
Sbjct: 25  SNTLVLRSSRNSSSSLVKRSYVSSRVSPKKPQHNSDATSSAQKVANKTHTSSVLPGTILK 84

Query: 202 DLCIQVG 182
            LCI+ G
Sbjct: 85  GLCIKAG 91


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 378 EKFF*WPYE--FQTD*FEAFLFETFNNGAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSI 551
           ++F  W Y+  ++ D     L ET N    K    T+RL H    L+LF    +L TC +
Sbjct: 283 DQFTDWLYQRWYEKDKLIDTLLETGNFPGPKKLHTTVRLKHRLEILSLF---SVLFTCIV 339


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +2

Query: 104 NFFVRKPEAYFLFSRFNAVRTMDDVTPNLNAEITADSAGLRVSWVSC-AKHLTASLHNIK 280
           N FV  P       R +  RT+   TP+L  E  ++    R+S V C   H  +S  N  
Sbjct: 5   NTFVDYPTTQVRKERVHTYRTLTSATPSL--EFFSNENTNRLSEVQCKLTHFLSSSENSS 62

Query: 281 ALPYHRDHR 307
           ++   R H+
Sbjct: 63  SVRNTRTHK 71


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 424 KPFFSKRSIMVPTRPRCTPSGLT 492
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
 Frame = -1

Query: 331 LVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQP--GTIRGDLCIQVGR--NIIH 167
           L++     P++  V  GL +++ G ++   T+P+      GT+ GD C+++G   NI+H
Sbjct: 349 LLRLKDKHPLIVDV-RGLGLLQ-GIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVH 405


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = -1

Query: 385 NFSSNTTAIWHPG------LSSPGLVKYMSSGPVVPMVWEGLNV-VKTGRQMLG 245
           N S  +  +WH        L+  GL+KY     ++P++  GL+  V+ G ++ G
Sbjct: 373 NISITSPLVWHGAILFFAKLAGAGLIKYSKCLHILPLIEVGLSYEVRYGTRVTG 426


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = -1

Query: 301 VPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNI----IHGSDSVESAKKE 134
           +  V EG N +  GRQ+L  T+P           + + +G  I     H SD +   + +
Sbjct: 388 ITWVSEGANTMDRGRQLLEVTHPRGRLDAGTMSTMGVGMGYAIASAFAHSSDKIVVVEGD 447

Query: 133 IGLWFTDKEV 104
               F+  E+
Sbjct: 448 SAFGFSAMEL 457


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -1

Query: 391 QKNFSSNTTAIWHPGLSSPGLVKYMSSGPVVPMVWEG----LNVVKTGRQMLGATNPAD 227
           ++ FS N +  W   L  PG V+  + G  +   +EG    L+ V+  R+++   N  D
Sbjct: 96  ERMFSENGSLTWQELLRQPGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRKLMSKANVDD 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,332
Number of Sequences: 5004
Number of extensions: 48332
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)