Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_H22
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    30   0.27 
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    30   0.35 
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    27   1.9  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    27   3.3  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    26   4.4  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   5.8  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    25   7.6  

>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 235 LIGKAEFAIDKTKYERLVT-YIEAMKNVPAVKSYFL 131
           L+G AEF ++  +YER  T Y E +K+V  V   F+
Sbjct: 406 LVGYAEFLMEHEEYERAATLYAETLKSVEEVALKFI 441


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 107 H*VSRQRRCQLQYARH*CCLLHAPQEKEGIKS 12
           H V R+ R   QY+   CCL++A +  EG+K+
Sbjct: 427 HLVKRKSRLVRQYSLAWCCLINAIRRTEGVKA 458


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = -3

Query: 550 LFDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVESFAPAQSAYYTAAF--NAQALEPS 377
           +F+     V  DE+   + L  S  LR   D++    +    +  Y   F   A+A E +
Sbjct: 140 MFNDAFNEVIEDEEKRVVDLYPSS-LRTKIDELNDYFYDTVNNGVYKTGFATTAEAYEKN 198

Query: 376 MVETYHKGLEGLQKELETRSTKYLHGDEPGWVDYTLWPFLERFE 245
            V    +GL+ L++ L+     +L GD     D  L+  + RF+
Sbjct: 199 -VRVVFQGLDRLEQVLKESKGPFLLGDHLTETDVRLYTTIVRFD 241


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = -3

Query: 658 IPYDLVFINLDQKPEWIFNFSPKGTVPALEYEPGKALFDSNIINVYLDEKYPEIPLQASD 479
           IP D++F+ +DQK    F  S          +   AL    I+  +LD+++  IP+   +
Sbjct: 237 IPGDVIFV-IDQKEHPRFKRSGDHLFYEAHVDLLTALAGGQIVVEHLDDRWLTIPIIPGE 295

Query: 478 PLRRAQDKIL 449
            +R  + K+L
Sbjct: 296 CIRPNELKVL 305


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 673 LNXKNIPYDLVFINLDQK-PEWIFNFSPKGTVP 578
           L  +N   D + IN D   P W   FSPK T+P
Sbjct: 93  LENQNSIVDSIHINADTVLPVWSEAFSPKSTLP 125


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 24/97 (24%), Positives = 31/97 (31%)
 Frame = -3

Query: 580 PALEYEPGKALFDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVESFAPAQSAYYTAAF 401
           PA   E  K   +S   N   DEK  E PL   +     +             A      
Sbjct: 497 PATNEEVEKNNANSENANGLTDEKIIEAPLDTKENSDDDKPSPAAAEDIGTNGAIEEIPQ 556

Query: 400 NAQALEPSMVETYHKGLEGLQKELETRSTKYLHGDEP 290
            ++ LEP    T +  L  L KE +   T      EP
Sbjct: 557 VSEVLEPEKAHTTNLQLNALDKEEDLNITTVKQSSEP 593


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 382 PSMVETYHKGLEGLQKELETRSTKYLHGDEPGWVDYTLW 266
           P  V+   +  +  +K++ETR    +  ++PG V Y LW
Sbjct: 37  PRKVKIVKRKKQPARKQIETRPEYEMEPEQPGQV-YNLW 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,130
Number of Sequences: 5004
Number of extensions: 55881
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)