Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_H20
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 220 8e-58
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 209 1e-54
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 207 4e-54
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 92 3e-19
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 40 0.002
06_02_0015 + 10599131-10600248,10601009-10602752 30 1.2
03_01_0404 + 3138624-3140096 30 1.6
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 4.9
03_05_0705 - 26965352-26965542,26965732-26965763,26966141-269662... 27 8.6
03_01_0646 + 4742398-4742994,4743681-4744085 27 8.6
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 220 bits (537), Expect = 8e-58
Identities = 92/132 (69%), Positives = 120/132 (90%)
Frame = -1
Query: 434 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 255
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T EE+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 254 IITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKXRAHRGMRHY 75
++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKK R HRG+RHY
Sbjct: 63 LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 122
Query: 74 WGLRVRGQHTKT 39
WGLRVRGQHTKT
Sbjct: 123 WGLRVRGQHTKT 134
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 209 bits (510), Expect = 1e-54
Identities = 96/154 (62%), Positives = 124/154 (80%), Gaps = 16/154 (10%)
Frame = -1
Query: 452 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 288
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60
Query: 287 -----------AGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLD 141
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD
Sbjct: 61 YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALD 120
Query: 140 SKLREDLERLKKXRAHRGMRHYWGLRVRGQHTKT 39
KLR+DLERLKK R HRG+RHYWGLRVRGQHTKT
Sbjct: 121 MKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKT 154
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 207 bits (506), Expect = 4e-54
Identities = 96/156 (61%), Positives = 124/156 (79%), Gaps = 18/156 (11%)
Frame = -1
Query: 452 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 288
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 287 -------------AGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSN 147
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+
Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNA 120
Query: 146 LDSKLREDLERLKKXRAHRGMRHYWGLRVRGQHTKT 39
LD KLR+DLERLKK R HRG+RHYWGLRVRGQHTKT
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKT 156
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/58 (70%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
Frame = -1
Query: 209 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKXRAHRGMRHYWGLRVRGQHTKT 39
W L R+KD DG++SQ+ S+ LD KLR+DLERLKK R HRG+RHYWGLRVRGQHTKT
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKT 64
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = -1
Query: 131 REDLERLKKXRAHRGMRHYWGLRVRGQHTK 42
R +ERLK+ R +RG+RH GL VRGQ TK
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPVRGQRTK 137
>06_02_0015 + 10599131-10600248,10601009-10602752
Length = 953
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 181 LMVNTAS*PPPTWIQNSVKIWRGSRRXALTEGCDITGACVCVVSTRRRXGKERK 20
++V T++ PP W++ S K G L +G D A T RR ++R+
Sbjct: 141 IVVATSALPPVEWLRASAKRLAGKAEELLRKGDDEEAASASASMTTRRVEEDRQ 194
>03_01_0404 + 3138624-3140096
Length = 490
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 179 DGKYSQLTSSNLDSKLREDLERLKKXRAHRGMR 81
+G Y QL++ LDS ++D R++K RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 307 SAFLRTMLEYLRPTPLIAVIANITL 381
S+FL TM EY+R P A +AN T+
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKTV 279
>03_05_0705 -
26965352-26965542,26965732-26965763,26966141-26966235,
26966737-26966810,26966894-26967029,26967137-26967200,
26967285-26967350,26967445-26967587,26969314-26969407,
26969779-26969902,26970016-26970193,26970273-26970395,
26970884-26970955,26971032-26971139,26972511-26972627,
26972757-26972889,26973209-26973299,26974642-26974722,
26975342-26975421,26975500-26975705,26977417-26977893
Length = 894
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 391 SMFVFMIRRIC*NLSGM-TSDILVKFLTNVPKHNTGETKSNSFKFPIVSRIKYVL 552
++F I+R+C G+ T L + + NV +HN ET I++R YV+
Sbjct: 552 TVFYGRIKRLCETELGVITQCCLARNVQNVRQHNISETWHLKSMLRIINRSVYVI 606
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 369 CDDGYQRCWPEVLQHCSQKSR 307
CDD Y+R W +L+ ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,280,770
Number of Sequences: 37544
Number of extensions: 331923
Number of successful extensions: 856
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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