Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_H20
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical p...   226   1e-59
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    29   1.9  
Z71186-1|CAA94913.1|  301|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein...    27   7.7  
AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe...    27   7.7  

>Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical
           protein Y57G11C.16 protein.
          Length = 154

 Score =  226 bits (552), Expect = 1e-59
 Identities = 100/138 (72%), Positives = 121/138 (87%)
 Frame = -1

Query: 452 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 273
           MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ +  +KAD+D++KRAGE T
Sbjct: 1   MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60

Query: 272 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKXRAH 93
           EE+ +KI+TIM NP QYKIP+WFLNRQKDI DGK  QL S+ +D+KLREDLER+KK R H
Sbjct: 61  EEDFDKIVTIMQNPSQYKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLH 120

Query: 92  RGMRHYWGLRVRGQHTKT 39
           RG+RHYWGLRVRGQHTKT
Sbjct: 121 RGLRHYWGLRVRGQHTKT 138


>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
            transmembrane conductanceregulator homolog protein 1
            protein.
          Length = 1247

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 527  IGNLNELLFVSPVLCLGTLVRNLTKMSLVIPDKFQHILRIMN 402
            IGN    L V+ +LC+  LV    + + ++     H+ RI N
Sbjct: 946  IGNAQFALSVASILCISELVSTFIRTTCILESLTPHVQRISN 987


>Z71186-1|CAA94913.1|  301|Caenorhabditis elegans Hypothetical
           protein F23D12.1 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/60 (21%), Positives = 27/60 (45%)
 Frame = +1

Query: 400 VFMIRRIC*NLSGMTSDILVKFLTNVPKHNTGETKSNSFKFPIVSRIKYVLAVVLHSSSF 579
           +F I  IC  L  +  D+  +    +      E+  + F+F  +  + YV + + H++ F
Sbjct: 42  IFEIFTICFLLVAVLPDVTTRVCDKLSNDTESESLFDHFEFENIKNVAYVSSFLCHNNIF 101


>AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein
           protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 98  AHRGMRHYWGLRVRGQHTKTXWQGE 24
           AH   RH+ G+ + GQH  + + G+
Sbjct: 527 AHSSSRHHSGMSIHGQHPPSTYHGK 551


>AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform c protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 98  AHRGMRHYWGLRVRGQHTKTXWQGE 24
           AH   RH+ G+ + GQH  + + G+
Sbjct: 504 AHSSSRHHSGMSIHGQHPPSTYHGK 528


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,956,473
Number of Sequences: 27780
Number of extensions: 297573
Number of successful extensions: 886
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)