Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_H15
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z93381-4|CAB07607.2|  382|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical protein
            C52E12.4 protein.
          Length = 1487

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 25/84 (29%), Positives = 42/84 (50%)
 Frame = +3

Query: 207  SNSFDFTNLIYQIRNVKSGSCH*ATEKILKIKIKMEAG*LIDIWLSPSTPQRHFNQKNVG 386
            +N+F  T + YQ+  V +GS   A   I  + ++        I L P+TP   F+ KN+G
Sbjct: 1126 TNTFTKTKMDYQVVIV-TGSGRGAIPAIW-VTVEGSLCSTPPIMLKPNTPLFKFDHKNLG 1183

Query: 387  *LLSILINPQQ*DEFCYFFFSTVI 458
             L ++ I  QQ ++   +F   V+
Sbjct: 1184 ILSTLRIGHQQSEKPVQWFLEYVL 1207


>Z93381-4|CAB07607.2|  382|Caenorhabditis elegans Hypothetical
           protein F28G4.4 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
 Frame = -1

Query: 314 LHFNFNF*DFFSCLMTGP---------GFNVAYLINQICKIETVRNCLS 195
           +HF++NF +F + L T P           NV  + N +C ++ + N LS
Sbjct: 58  IHFDYNFNEFAAVLKTMPKAPYLILYDSSNVDVVFNHVCNLQFIPNALS 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,448,476
Number of Sequences: 27780
Number of extensions: 270382
Number of successful extensions: 409
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)