Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_H12
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and I...   129   3e-31
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    29   0.31 
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    25   6.7  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   6.7  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    25   6.7  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   6.7  

>SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and III
           subunit Rpb6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score =  129 bits (311), Expect = 3e-31
 Identities = 60/84 (71%), Positives = 70/84 (83%)
 Frame = -2

Query: 253 QAGGGVDKSKRITTRYMTKYERARVLGTRALQIAMCSPVMVELEGETDPLQIAMKELKHG 74
           Q+G  V K  R TT YMTKYERAR+LGTRALQI+M +PV+V+LEGETDPLQIAMKEL   
Sbjct: 59  QSGKAVAKEDRTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQK 118

Query: 73  KIPIIIRRYLPDHSYEDWSIDEXI 2
           KIP+++RRYLPD SYEDWS+ E I
Sbjct: 119 KIPLLVRRYLPDGSYEDWSVAELI 142


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 84  NSFMAICNGSVSPSSSTMTGEHIAICKALVPKTLARSYLVMYRVVIRLD 230
           +SF  + +   SPSSS +   +I +C   +P+ L  S L    +V+ LD
Sbjct: 263 SSFTIVNDPLKSPSSSRLRIRNITLCADKIPRPLLNSKLPRKTLVLDLD 311


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 124 EGETDPLQIAMKELKHGKIPI 62
           +GET P+ I MK+ K   +P+
Sbjct: 39  DGETRPIAIEMKDSKGNTVPV 59


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 205 MTKYERARVLGTRALQIAMCSPVM 134
           M+ Y R+ + G   + +A CSP++
Sbjct: 1   MSSYLRSFIFGLLTISLAQCSPIL 24


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 141 LSWWNLKEKLIHYK 100
           +SWW+L + LIH K
Sbjct: 735 ISWWSLDDLLIHQK 748


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 114 VSPSSSTMTGEHIAICKALVPKTLARSYLVMYRVVIRLDLSTP 242
           + P  ST+   HIA+C A +    +R+ ++ Y ++   DLS P
Sbjct: 77  IVPDCSTIV--HIALCAAYLIVIDSRNTVLSYPLMKHRDLSKP 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,669,678
Number of Sequences: 5004
Number of extensions: 28243
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)