Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_H12
         (512 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    29   0.12 
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    23   6.1  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   8.0  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
            protein.
          Length = 942

 Score = 28.7 bits (61), Expect = 0.12
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -2

Query: 277  NVQCLALGQAGGGVDKSKRITTRYMTKYERARVLGTRALQIAMCSPVMVELEGETDPL 104
            N  CLA+  A GG  ++K I TRY   + R  ++    +Q+  C    +  +  T PL
Sbjct: 866  NQSCLAMLPAEGGCRRTKHIDTRY--NFIR-DLVNNNVIQVQYCPSERMIADALTKPL 920


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 91  KELKHGKIPIIIRRYLPDHSYEDW 20
           KEL   K+  II    P H   DW
Sbjct: 363 KELDPEKLNTIIDELFPSHPVTDW 386


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 243 PPACPKARHCTL 278
           PPAC    HCT+
Sbjct: 405 PPACSTRLHCTM 416


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 414,970
Number of Sequences: 2352
Number of extensions: 7126
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46514490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)