Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_H11
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1077 - 33938766-33939201,33939316-33939398                       33   0.25 
05_01_0142 - 940421-940701,941262-941574                               32   0.59 
08_02_1621 - 28304013-28304582                                         29   3.1  
10_05_0062 + 8694431-8694877                                           28   7.2  
10_01_0143 - 1696176-1696736                                           28   9.6  
03_03_0016 - 13761007-13761489,13761929-13762096,13763086-137631...    28   9.6  
01_03_0276 - 14489847-14489921,14490144-14490240,14491480-144915...    28   9.6  

>02_05_1077 - 33938766-33939201,33939316-33939398
          Length = 172

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 544 SMATTTATIRSRMATSRITLASDATANTPTMGN-PATDTDHRVS 416
           ++A+  AT R R A +    AS A+A TP +GN  A D D R +
Sbjct: 94  NLASVQATQRQREAAATAAAASSASATTPPLGNAAAADDDARTT 137


>05_01_0142 - 940421-940701,941262-941574
          Length = 197

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 509 HGDFSHHAGFGRNGEHAHNGKSRNG 435
           HG   HH G  ++G+H H+GK ++G
Sbjct: 157 HGYGGHHGGKFKHGKHGHHGKFKHG 181


>08_02_1621 - 28304013-28304582
          Length = 189

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 528 RPRFGVAWRLLASRWLRTQRRTRPQWEI 445
           RP FG+ WRL  +RW    RR R +W +
Sbjct: 12  RPGFGMWWRL--ARWSTLIRRHRTRWRL 37


>10_05_0062 + 8694431-8694877
          Length = 148

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 670 LTVASISTAFLPKAAALWSYPCWSACLP*XP 762
           L  A+ + A LP AAA+W +P  +   P  P
Sbjct: 89  LPAATAAAAMLPAAAAVWMWPAAATAAPLLP 119


>10_01_0143 - 1696176-1696736
          Length = 186

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +2

Query: 458 GRVRRCVRSQRDARSRHATPNR---GRCGCHGNRS 553
           GR R+ V  QR  R   A   R   GR GCHG+ S
Sbjct: 66  GRQRQRVAGQRQQRLMAAVATRCTRGRSGCHGSDS 100


>03_03_0016 -
           13761007-13761489,13761929-13762096,13763086-13763130,
           13763380-13763447,13763532-13763586,13763659-13763814,
           13763904-13764002,13764792-13764872,13765513-13765636,
           13765938-13766032,13766434-13766560,13766768-13766871,
           13767278-13767359,13768012-13768049
          Length = 574

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 556 ARTVSMATTTATIRSRMATSRITLASDATANTPTMGNPATDTDH 425
           ART +     A +RSR   SR+ + + ATA      N   D+D+
Sbjct: 321 ARTATTEDAIAQLRSRRLMSRMEVPTGATAEDRADRNEVMDSDN 364


>01_03_0276 -
           14489847-14489921,14490144-14490240,14491480-14491546,
           14491748-14491877,14491995-14492152,14493004-14493235,
           14493760-14493895,14493982-14494085,14495709-14495987
          Length = 425

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 446 ISHCGRVRRCVRSQRDARSRHATPNRGR 529
           + HCGR RRCV   + + S    P+ G+
Sbjct: 43  LPHCGRRRRCVLRSKASSSPSPPPSPGK 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,372,269
Number of Sequences: 37544
Number of extensions: 316301
Number of successful extensions: 799
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)