Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_H11
(780 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S56396-1|AAB25755.1| 342|Homo sapiens platelet-activating facto... 31 6.1
S52624-2|AAB24695.2| 342|Homo sapiens platelet-activating facto... 31 6.1
M88177-1|AAA60214.1| 342|Homo sapiens platelet activating facto... 31 6.1
M80436-1|AAA60001.1| 342|Homo sapiens platelet activating facto... 31 6.1
M76674-1|AAA60002.1| 342|Homo sapiens platelet activating facto... 31 6.1
L07334-1|AAA60108.1| 342|Homo sapiens platelet activating facto... 31 6.1
D10202-1|BAA01050.1| 342|Homo sapiens platelet-activating facto... 31 6.1
BT009801-1|AAP88803.1| 342|Homo sapiens platelet-activating fac... 31 6.1
BC063000-1|AAH63000.1| 342|Homo sapiens platelet-activating fac... 31 6.1
BC013816-1|AAH13816.1| 342|Homo sapiens platelet-activating fac... 31 6.1
AY275466-1|AAP32298.1| 342|Homo sapiens platelet-activating fac... 31 6.1
AY283618-1|AAP37483.1| 1564|Homo sapiens hypothetical protein pr... 30 8.1
AL445232-2|CAI16506.2| 1564|Homo sapiens zinc finger CCCH-type c... 30 8.1
AL445232-1|CAI16505.1| 1668|Homo sapiens zinc finger CCCH-type c... 30 8.1
AL157758-3|CAM13064.1| 1564|Homo sapiens zinc finger CCCH-type c... 30 8.1
AL157758-2|CAI10903.1| 1668|Homo sapiens zinc finger CCCH-type c... 30 8.1
AB020660-1|BAA74876.1| 967|Homo sapiens KIAA0853 protein protein. 30 8.1
>S56396-1|AAB25755.1| 342|Homo sapiens platelet-activating factor
receptor protein.
Length = 342
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -2
Query: 272 IEILFIYVAVSVKFFIIMNCIIVYCNLFKIK*ILMQ 165
+ +L I++ + FF++ II++CNL I+ +LMQ
Sbjct: 182 VPVLIIHIFIVFSFFLVF-LIILFCNLVIIRTLLMQ 216
>S52624-2|AAB24695.2| 342|Homo sapiens platelet-activating factor
receptor protein.
Length = 342
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -2
Query: 272 IEILFIYVAVSVKFFIIMNCIIVYCNLFKIK*ILMQ 165
+ +L I++ + FF++ II++CNL I+ +LMQ
Sbjct: 182 VPVLIIHIFIVFSFFLVF-LIILFCNLVIIRTLLMQ 216
>M88177-1|AAA60214.1| 342|Homo sapiens platelet activating factor
receptor protein.
Length = 342
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -2
Query: 272 IEILFIYVAVSVKFFIIMNCIIVYCNLFKIK*ILMQ 165
+ +L I++ + FF++ II++CNL I+ +LMQ
Sbjct: 182 VPVLIIHIFIVFSFFLVF-LIILFCNLVIIRTLLMQ 216
>M80436-1|AAA60001.1| 342|Homo sapiens platelet activating factor
receptor protein.
Length = 342
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -2
Query: 272 IEILFIYVAVSVKFFIIMNCIIVYCNLFKIK*ILMQ 165
+ +L I++ + FF++ II++CNL I+ +LMQ
Sbjct: 182 VPVLIIHIFIVFSFFLVF-LIILFCNLVIIRTLLMQ 216
>M76674-1|AAA60002.1| 342|Homo sapiens platelet activating factor
receptor protein.
Length = 342
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -2
Query: 272 IEILFIYVAVSVKFFIIMNCIIVYCNLFKIK*ILMQ 165
+ +L I++ + FF++ II++CNL I+ +LMQ
Sbjct: 182 VPVLIIHIFIVFSFFLVF-LIILFCNLVIIRTLLMQ 216
>L07334-1|AAA60108.1| 342|Homo sapiens platelet activating factor
receptor protein.
Length = 342
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -2
Query: 272 IEILFIYVAVSVKFFIIMNCIIVYCNLFKIK*ILMQ 165
+ +L I++ + FF++ II++CNL I+ +LMQ
Sbjct: 182 VPVLIIHIFIVFSFFLVF-LIILFCNLVIIRTLLMQ 216
>D10202-1|BAA01050.1| 342|Homo sapiens platelet-activating factor
receptor protein.
Length = 342
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -2
Query: 272 IEILFIYVAVSVKFFIIMNCIIVYCNLFKIK*ILMQ 165
+ +L I++ + FF++ II++CNL I+ +LMQ
Sbjct: 182 VPVLIIHIFIVFSFFLVF-LIILFCNLVIIRTLLMQ 216
>BT009801-1|AAP88803.1| 342|Homo sapiens platelet-activating factor
receptor protein.
Length = 342
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -2
Query: 272 IEILFIYVAVSVKFFIIMNCIIVYCNLFKIK*ILMQ 165
+ +L I++ + FF++ II++CNL I+ +LMQ
Sbjct: 182 VPVLIIHIFIVFSFFLVF-LIILFCNLVIIRTLLMQ 216
>BC063000-1|AAH63000.1| 342|Homo sapiens platelet-activating factor
receptor protein.
Length = 342
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -2
Query: 272 IEILFIYVAVSVKFFIIMNCIIVYCNLFKIK*ILMQ 165
+ +L I++ + FF++ II++CNL I+ +LMQ
Sbjct: 182 VPVLIIHIFIVFSFFLVF-LIILFCNLVIIRTLLMQ 216
>BC013816-1|AAH13816.1| 342|Homo sapiens platelet-activating factor
receptor protein.
Length = 342
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -2
Query: 272 IEILFIYVAVSVKFFIIMNCIIVYCNLFKIK*ILMQ 165
+ +L I++ + FF++ II++CNL I+ +LMQ
Sbjct: 182 VPVLIIHIFIVFSFFLVF-LIILFCNLVIIRTLLMQ 216
>AY275466-1|AAP32298.1| 342|Homo sapiens platelet-activating factor
receptor protein.
Length = 342
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -2
Query: 272 IEILFIYVAVSVKFFIIMNCIIVYCNLFKIK*ILMQ 165
+ +L I++ + FF++ II++CNL I+ +LMQ
Sbjct: 182 VPVLIIHIFIVFSFFLVF-LIILFCNLVIIRTLLMQ 216
>AY283618-1|AAP37483.1| 1564|Homo sapiens hypothetical protein
protein.
Length = 1564
Score = 30.3 bits (65), Expect = 8.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 544 SMATTTATIRSRMATSRITLASDATANTPTMGNPATDTDHR 422
++A TTA + +TS IT+++ AT T A + HR
Sbjct: 1118 TLAATTAAAATSFSTSAITISTSATPTNTTNNTFANEDSHR 1158
>AL445232-2|CAI16506.2| 1564|Homo sapiens zinc finger CCCH-type
containing 13 protein.
Length = 1564
Score = 30.3 bits (65), Expect = 8.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 544 SMATTTATIRSRMATSRITLASDATANTPTMGNPATDTDHR 422
++A TTA + +TS IT+++ AT T A + HR
Sbjct: 1118 TLAATTAAAATSFSTSAITISTSATPTNTTNNTFANEDSHR 1158
>AL445232-1|CAI16505.1| 1668|Homo sapiens zinc finger CCCH-type
containing 13 protein.
Length = 1668
Score = 30.3 bits (65), Expect = 8.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 544 SMATTTATIRSRMATSRITLASDATANTPTMGNPATDTDHR 422
++A TTA + +TS IT+++ AT T A + HR
Sbjct: 1118 TLAATTAAAATSFSTSAITISTSATPTNTTNNTFANEDSHR 1158
>AL157758-3|CAM13064.1| 1564|Homo sapiens zinc finger CCCH-type
containing 13 protein.
Length = 1564
Score = 30.3 bits (65), Expect = 8.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 544 SMATTTATIRSRMATSRITLASDATANTPTMGNPATDTDHR 422
++A TTA + +TS IT+++ AT T A + HR
Sbjct: 1118 TLAATTAAAATSFSTSAITISTSATPTNTTNNTFANEDSHR 1158
>AL157758-2|CAI10903.1| 1668|Homo sapiens zinc finger CCCH-type
containing 13 protein.
Length = 1668
Score = 30.3 bits (65), Expect = 8.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 544 SMATTTATIRSRMATSRITLASDATANTPTMGNPATDTDHR 422
++A TTA + +TS IT+++ AT T A + HR
Sbjct: 1118 TLAATTAAAATSFSTSAITISTSATPTNTTNNTFANEDSHR 1158
>AB020660-1|BAA74876.1| 967|Homo sapiens KIAA0853 protein protein.
Length = 967
Score = 30.3 bits (65), Expect = 8.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 544 SMATTTATIRSRMATSRITLASDATANTPTMGNPATDTDHR 422
++A TTA + +TS IT+++ AT T A + HR
Sbjct: 417 TLAATTAAAATSFSTSAITISTSATPTNTTNNTFANEDSHR 457
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,519,151
Number of Sequences: 237096
Number of extensions: 1759739
Number of successful extensions: 3666
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3663
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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