Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_H02
(401 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 152 9e-38
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 146 4e-36
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 141 2e-34
03_05_0830 + 28034179-28035492 29 1.4
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 28 2.4
10_08_1064 + 22636603-22636785,22636901-22637671,22637749-22638960 27 4.2
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 27 4.2
09_04_0339 + 16812809-16812850,16813099-16813527 27 5.6
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 27 5.6
07_03_1085 - 23851852-23853165 27 5.6
03_05_0232 + 22174516-22174768,22175278-22175471,22175557-221756... 26 9.7
01_01_0319 - 2574583-2574675,2575853-2576055,2576140-2576364,257... 26 9.7
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 152 bits (369), Expect = 9e-38
Identities = 69/96 (71%), Positives = 82/96 (85%)
Frame = -3
Query: 339 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 160
MVAAKK KK+ ++IN++L LVMKSGKY LGYK L+TLR KAKLVII+ N PPLRKSEI
Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEI 60
Query: 159 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAI 52
EYYA+LAK VHH+ GNN++LGTACGKY+RVC L+I
Sbjct: 61 EYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSI 96
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 146 bits (355), Expect = 4e-36
Identities = 65/95 (68%), Positives = 77/95 (81%)
Frame = -3
Query: 336 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIE 157
V A QKK+ ++IN++L LVMKSGKY LGYK LKTLR K KL+I+A N PPLRKSEIE
Sbjct: 43 VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLRKSEIE 102
Query: 156 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAI 52
YYA+L K VHH+ GNN++LGTACGKYYRVC L+I
Sbjct: 103 YYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSI 137
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 141 bits (342), Expect = 2e-34
Identities = 62/89 (69%), Positives = 73/89 (82%)
Frame = -3
Query: 318 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLA 139
KK E IN++L LVMKSGKY LGYK LKTLR K KLVI+A N PPLRKSEIEYYA+L
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEIEYYAMLG 185
Query: 138 KTGVHHYSGNNIELGTACGKYYRVCTLAI 52
K V+H++GNN++LGTACGKYYRVC L++
Sbjct: 186 KVSVYHFNGNNVDLGTACGKYYRVCCLSV 214
>03_05_0830 + 28034179-28035492
Length = 437
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 270 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 187
+GKY G TLKTL G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -1
Query: 386 SICALGEDSLAFTLPKWLQQRNRKRPSSQLTPALPW 279
S+ L +++ LP LQ N RPS LT ALPW
Sbjct: 7 SVSVLHLPAISLPLP-CLQGSNPSRPSLGLTNALPW 41
>10_08_1064 + 22636603-22636785,22636901-22637671,22637749-22638960
Length = 721
Score = 27.5 bits (58), Expect = 4.2
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 131 PVLARRA*YSISDFLSGGAFLAMITSFALPCRRVFKVCLYPKQYFPDFITKARRELIDSM 310
PVL + Y++ L GAF A+ TSF + + + + ++F + LI S+
Sbjct: 36 PVLTQAVGYAV--VLGFGAFFALFTSFLVWLEKRYVGSQHTSEWFNTAGRSVKTGLIASV 93
Query: 311 VFFCF-FAATILEA 349
+ + +AATIL++
Sbjct: 94 IVSQWTWAATILQS 107
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = -3
Query: 288 LALVMKSGKY-CL--GYKQTLKTLRQGKAKLVIIAKNAPPL 175
L LV ++ + CL G K+ +K++R+G+ L IIA N P+
Sbjct: 33 LKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPI 73
>09_04_0339 + 16812809-16812850,16813099-16813527
Length = 156
Score = 27.1 bits (57), Expect = 5.6
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Frame = -3
Query: 357 SIYASKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 178
+I S ++ + K I+ + + + L K+ + + L ++ APP
Sbjct: 15 AIVVSAVLVQVECKAPIDKCLTEASQAINKALEALMDKRLTEASQANNKALDVVVVAAPP 74
Query: 177 LRKSEIEY----YALLAKTGVHHYSGNNIELGTACGKYYRVCTLAIT 49
+KSEIE+ + A + G+ +L TA Y V +T
Sbjct: 75 AKKSEIEHAMWKQRMFAFAALGMAEGDEKKLATASLAYKNVANAVLT 121
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 27.1 bits (57), Expect = 5.6
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -3
Query: 336 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 181
V++ Q +ES+ + L V SG Y LG+KQ L+T +G I+ P
Sbjct: 1333 VSSSLQFSGLESMET-LKEVWLSGSYELGFKQQLETELKGNENEPILELEKP 1383
>07_03_1085 - 23851852-23853165
Length = 437
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 270 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 187
+GKY G TLK L G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKALEMGAVETLIVWEN 326
>03_05_0232 +
22174516-22174768,22175278-22175471,22175557-22175604,
22176707-22176784,22178073-22178145,22178406-22178577,
22179652-22180083,22180209-22180400,22180696-22180771
Length = 505
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 273 KSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 178
KS Y GY + +T R+GK + I K+ PP
Sbjct: 18 KSAIYLWGYNHSGQTARKGKECHLRIPKSLPP 49
>01_01_0319 -
2574583-2574675,2575853-2576055,2576140-2576364,
2576590-2576603,2577146-2577210
Length = 199
Score = 26.2 bits (55), Expect = 9.7
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -3
Query: 339 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 160
++A Q+ + E+ N RL L +K+ + Q L+ + K K + K K+EI
Sbjct: 104 VLAQDSQRISQENENLRLQLALKTKELEHEENQKLRLQLELKNKDIESLKKQNDELKAEI 163
Query: 159 EYYALLAK 136
EYY K
Sbjct: 164 EYYKKTTK 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,812,634
Number of Sequences: 37544
Number of extensions: 194203
Number of successful extensions: 414
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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