Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_G24
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0269 + 2080338-2080508,2081086-2081335,2081432-2082648,208...    29   4.7  
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616...    28   8.1  
01_01_0578 - 4296867-4296913,4296927-4297015,4297270-4297394,429...    28   8.1  

>03_01_0269 +
           2080338-2080508,2081086-2081335,2081432-2082648,
           2082933-2083083,2083247-2083563
          Length = 701

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +3

Query: 21  FCPXNNISASVPILNLVQGPFSIKQRSSDSKQIPHIKFDRSETSSRLKTSLGMIEKL 191
           F P NN+  ++ +L L+   F++K+   D   + H+ F  S  S +LK      E+L
Sbjct: 245 FVPRNNLEEAILLLMLLLRKFNLKRLERDPTVMHHLTFALS-MSGQLKPLAIQFEEL 300


>10_08_0343 -
           16960764-16960895,16961166-16961171,16961272-16961640,
           16962118-16962304,16962567-16962759,16962864-16963137,
           16963215-16963374,16963985-16964199,16964784-16964876,
           16965192-16965260,16965293-16965445,16965534-16965737,
           16966416-16966691,16967336-16967431,16967585-16967788,
           16967877-16968069,16968229-16968374,16968771-16969425,
           16971462-16971774,16971989-16972139,16972602-16973815,
           16973933-16974182,16974784-16975035
          Length = 1934

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +3

Query: 21  FCPXNNISASVPILNLVQGPFSIKQRSSDSKQIPHIKFDRSETSSRLKTSLGMIEKL 191
           F P NN+  ++ +L ++   F++K+   D   + H+ F  S  S +LK+     E+L
Sbjct: 272 FVPRNNMEEAILLLMILLRKFNLKRVERDPTIMHHLTFALS-ISGQLKSLAVQFEEL 327


>01_01_0578 -
           4296867-4296913,4296927-4297015,4297270-4297394,
           4297476-4297522,4297864-4298222,4298386-4298552,
           4298800-4298846,4299148-4299193,4299586-4299669,
           4300801-4300869
          Length = 359

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 42  SASVPILNLVQGPFSIKQRSSDSKQIPHIKFDRSETSSRLKTSLGMIEKLHY 197
           +AS      VQ   S+     + K++ H+K D    SS L  S     KLHY
Sbjct: 8   AASAAATAAVQCSSSVDNTLDEVKEVVHVKQDAPPPSSFLPNSSVCTYKLHY 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,645,111
Number of Sequences: 37544
Number of extensions: 214031
Number of successful extensions: 356
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)