Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_G24
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-48|AAY43983.1|  250|Caenorhabditis elegans Hypothetical...    29   4.2  
U39995-2|AAP40521.1|  139|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U39995-1|AAP40520.1|  162|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U46753-6|AAO21474.1|  740|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U46753-5|ABB88235.1|  803|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U46753-4|AAO21475.1|  764|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AC084197-48|AAY43983.1|  250|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.44 protein.
          Length = 250

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 167 IFRNDRKVTLHLRIVNSMPQKYVVFL*NSKIET*NLNSKIESDKELW 307
           I R  RK      +V ++P+KY   +  S I   N+N K++ +K+ W
Sbjct: 104 ILRKSRKECKVPSVVQALPEKYQKKI--SDIWEKNINEKVKKEKDCW 148


>U39995-2|AAP40521.1|  139|Caenorhabditis elegans Hypothetical
           protein M60.4b protein.
          Length = 139

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 189 TFRSFLKMFSIVTKFLICQILCAEF 115
           T R  +K+  I+  F+IC +LC+++
Sbjct: 13  TNRGIIKILQIIAGFIICSLLCSQW 37


>U39995-1|AAP40520.1|  162|Caenorhabditis elegans Hypothetical
           protein M60.4a protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 189 TFRSFLKMFSIVTKFLICQILCAEF 115
           T R  +K+  I+  F+IC +LC+++
Sbjct: 36  TNRGIIKILQIIAGFIICSLLCSQW 60


>U46753-6|AAO21474.1|  740|Caenorhabditis elegans Hypothetical
           protein C34F11.3a protein.
          Length = 740

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 170 FRNDRKVTLHLRIVNSMPQKYVVFL*NSKIET 265
           F N RKV  H+   +SM QK+++     KI+T
Sbjct: 286 FYNIRKVDTHIHAASSMNQKHLLRFIKKKIKT 317


>U46753-5|ABB88235.1|  803|Caenorhabditis elegans Hypothetical
           protein C34F11.3c protein.
          Length = 803

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 170 FRNDRKVTLHLRIVNSMPQKYVVFL*NSKIET 265
           F N RKV  H+   +SM QK+++     KI+T
Sbjct: 349 FYNIRKVDTHIHAASSMNQKHLLRFIKKKIKT 380


>U46753-4|AAO21475.1|  764|Caenorhabditis elegans Hypothetical
           protein C34F11.3b protein.
          Length = 764

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 170 FRNDRKVTLHLRIVNSMPQKYVVFL*NSKIET 265
           F N RKV  H+   +SM QK+++     KI+T
Sbjct: 310 FYNIRKVDTHIHAASSMNQKHLLRFIKKKIKT 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,110,485
Number of Sequences: 27780
Number of extensions: 236295
Number of successful extensions: 479
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)