Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_G20
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0180 - 1431758-1431838,1431975-1432061,1432180-1432230,143...    46   4e-05
02_02_0131 - 7065762-7065813,7065907-7065992,7066080-7066150,706...    43   3e-04
12_01_0180 - 1335825-1335980,1336584-1336670,1336767-1336859,133...    41   0.001
01_01_0899 - 7085140-7085539,7086777-7086868,7088098-7088187           34   0.12 
08_02_1631 + 28381248-28381418,28382069-28382144,28382925-283829...    34   0.16 

>11_01_0180 -
           1431758-1431838,1431975-1432061,1432180-1432230,
           1432275-1432367,1432496-1432568,1432657-1432751,
           1433428-1433515,1433647-1433936
          Length = 285

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 16/127 (12%)
 Frame = -2

Query: 752 HYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAA--LKQL 579
           H +Y  + +L     AS  +A+ LLL++ IF+P+     +  L   EGK       LKQ+
Sbjct: 156 HVWYLYLSKLVTINGASGAIAR-LLLDQFIFSPIFIGVFMSLLVTLEGKPSLVVPKLKQI 214

Query: 578 FAL--------------YLPVLEANWKWLTLFQVINLAFIPPMLRVLFMNIVGFGWAMFL 441
                            +L  + ANW+    FQ +N  F+P   +VL  N V   W + L
Sbjct: 215 LCSTADAVAVADMWVREWLSSVIANWQLWIPFQFLNFYFVPQKFQVLAANFVALAWNVIL 274

Query: 440 ASKRRKQ 420
           + K  K+
Sbjct: 275 SFKAHKE 281


>02_02_0131 -
           7065762-7065813,7065907-7065992,7066080-7066150,
           7066563-7066638,7066977-7067078,7068025-7068123,
           7068208-7068339
          Length = 205

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
 Frame = -2

Query: 752 HYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARF-EGKTHRAALKQLF 576
           H+ ++ ++ +F  +  +  +AKK+LLE++  +P      L+      E +  +    ++ 
Sbjct: 89  HFLHKVLDYIFKGKKDTKTIAKKVLLEQITSSPWNNLLFLFYYGYVVERRPFKEVKTRVK 148

Query: 575 ALYLPVLEANWKWLTLFQVINLAFIPPMLRVLFMNIVGFGWAMFLASKRRKQSQRK 408
             Y  V  + W +  +   IN  ++P   RV+F + V   W +FL  + R  S ++
Sbjct: 149 KQYPSVQLSAWMFWPIVGWINHMYMPLQFRVIFHSFVACCWGIFLNLRARAMSLKQ 204


>12_01_0180 -
           1335825-1335980,1336584-1336670,1336767-1336859,
           1336985-1337057,1337153-1337247,1337917-1338004,
           1338135-1338424
          Length = 293

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 28/92 (30%), Positives = 45/92 (48%)
 Frame = -2

Query: 752 HYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFA 573
           H +Y  + +L     AS  +A+ LLL++ IF+P+     +  L   EGK      K L  
Sbjct: 156 HVWYLYLSKLVMINGASGAIAR-LLLDQFIFSPIFIGVFMSLLVTLEGKPSLVVPK-LKQ 213

Query: 572 LYLPVLEANWKWLTLFQVINLAFIPPMLRVLF 477
            +L  + ANW+    FQ +N  F+P   ++ F
Sbjct: 214 EWLSSVIANWQLWIPFQFLNFYFVPQKFQLDF 245


>01_01_0899 - 7085140-7085539,7086777-7086868,7088098-7088187
          Length = 193

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
 Frame = -2

Query: 758 VPHYFYETVERLFPE--ESASFP-LAKKLLLERLIFAP--LMQAFSLYSLARFEGKTHRA 594
           V HY+YE ++R      +  +F  +A K+  + L+F P  L+  FS   LA   G++   
Sbjct: 57  VGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLLFGPVDLLLFFSYVGLA--SGRSVEQ 114

Query: 593 ALKQLFALYLPVLEANWKWLTLFQVINLAFIPPMLRVLFMNI 468
               +   ++P L          Q+ N  FIP   ++L++N+
Sbjct: 115 VKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQLLYVNL 156


>08_02_1631 +
           28381248-28381418,28382069-28382144,28382925-28382995,
           28383375-28383460,28384359-28384423,28384727-28385067
          Length = 269

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -2

Query: 683 LLLERLIFAPLMQA-FSLYSLARFEGKTHRAALKQLFALYLPVLEANWKWLTLFQVINLA 507
           +L+E+L  +P     F +Y     EG+       +L   Y  V    WK+  +   IN  
Sbjct: 58  VLVEQLTASPWNNMMFMMYYGLVVEGRPFSQVKSKLKKDYASVQLTAWKFWPIVSWINYE 117

Query: 506 FIPPMLRVLFMNIVGFGW 453
           ++P  LRVLF + V   W
Sbjct: 118 YMPLQLRVLFHSFVASCW 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,270,426
Number of Sequences: 37544
Number of extensions: 360988
Number of successful extensions: 655
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)