Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_G20
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical pr...    46   3e-05
AL023847-8|CAI46616.1|  262|Caenorhabditis elegans Hypothetical ...    33   0.25 
Z74042-1|CAA98536.1|  444|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U28992-3|AAA68391.1|  233|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z81086-7|CAB03118.2|  316|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF099923-4|AAC68808.2|  303|Caenorhabditis elegans Hypothetical ...    28   7.1  
U61954-6|AAK29811.2|  459|Caenorhabditis elegans Sand endocytosi...    28   9.4  
AF036706-1|AAK39287.1|  196|Caenorhabditis elegans Hypothetical ...    28   9.4  

>Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical
           protein T18D3.9 protein.
          Length = 181

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 25/89 (28%), Positives = 44/89 (49%)
 Frame = -2

Query: 704 SFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFALYLPVLEANWKWLTLF 525
           S  L KKL +++L F+P   A  L++L   + ++   +   L   +  +   + K     
Sbjct: 79  SLLLVKKLCIDQLCFSPCFNAAILFNLRLLQHQSAEKSWDLLKEDWFNIYATSLKVWPFV 138

Query: 524 QVINLAFIPPMLRVLFMNIVGFGWAMFLA 438
           QV+NL F+P   RV+   +V F W  +L+
Sbjct: 139 QVVNLCFVPLNYRVILNQVVAFFWNCYLS 167


>AL023847-8|CAI46616.1|  262|Caenorhabditis elegans Hypothetical
           protein Y57A10C.11 protein.
          Length = 262

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 20/71 (28%), Positives = 37/71 (52%)
 Frame = -2

Query: 638 SLYSLARFEGKTHRAALKQLFALYLPVLEANWKWLTLFQVINLAFIPPMLRVLFMNIVGF 459
           S +++ RF  K H  +L  LF++ +  L  +   L ++   N     P+L +L+  +VG 
Sbjct: 5   SSFTMGRFTTKLHNVSL--LFSIAISCLAMDLYILPIYN--NKPITIPVLTLLYCCLVGS 60

Query: 458 GWAMFLASKRR 426
           GW   + +KR+
Sbjct: 61  GWMWVVDNKRK 71


>Z74042-1|CAA98536.1|  444|Caenorhabditis elegans Hypothetical
           protein T11F9.1 protein.
          Length = 444

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -2

Query: 530 LFQVINLAFIP-PMLRVLFMNIVGFGWAMFLASKRRKQSQRKGD*TLISTLFFMVVDDVL 354
           L    +LAFI   ++ VL  N   F  +  L+  +RK + R    T++  +F  ++ +VL
Sbjct: 218 LIPFFSLAFINIRIVLVLSKNEFKFLHSTKLSDAKRKSAVRNATRTMVFIVFTYLLSNVL 277

Query: 353 NLTVII 336
           N+ +II
Sbjct: 278 NVIIII 283


>U28992-3|AAA68391.1|  233|Caenorhabditis elegans Hypothetical
           protein T05C1.3 protein.
          Length = 233

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 593 RLYEFFLQIEPKNIEKMLALMVQRSNV 673
           R+Y +FL +E  ++EK+L   V RS +
Sbjct: 128 RVYIYFLDVEMADVEKLLRFNVDRSTI 154


>Z81086-7|CAB03118.2|  316|Caenorhabditis elegans Hypothetical
           protein F53B6.7 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/52 (19%), Positives = 28/52 (53%)
 Frame = +2

Query: 161 NLXFVINIQFLMNTSYLFLHSTAYYTIHLEIHISFNKAKLDKDYIQLVGPDI 316
           N+ + INIQ+L +  ++   +   Y + ++     N AK+++  + ++  ++
Sbjct: 188 NMGYPINIQYLPSQGFIRAENIEDYNLRIQAFFKKNIAKIEQKQVVVISDNV 239


>AF099923-4|AAC68808.2|  303|Caenorhabditis elegans Hypothetical
           protein H09G03.1 protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/89 (23%), Positives = 43/89 (48%)
 Frame = -2

Query: 443 LASKRRKQSQRKGD*TLISTLFFMVVDDVLNLTVIIISQKTFLYQDQLIVCSLYPISLY* 264
           + SK+  QS  KG   +I T+F+ +   +L    +++ +   L+Q  L   S   I +  
Sbjct: 187 IVSKKSYQSD-KGHPLIIETVFYRMKSKLL----LLLKEYRTLFQYSLPHVSYQTILILP 241

Query: 263 MKYVFLSELCNMLLNVKISNLYSSRTGCL 177
           + +VFL ++   +    +S +  ++  CL
Sbjct: 242 LSHVFLGKITKQVFFSFLSKVLDTKIQCL 270


>U61954-6|AAK29811.2|  459|Caenorhabditis elegans Sand endocytosis
           protein familyprotein 1 protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 320 FLYQDQLIVC--SLYPISLY*MKYVFLSELCNMLLNVKISNLYSSR 189
           FL++  LI C  S YP  L     V   ++C++L   ++ N+Y  +
Sbjct: 105 FLHKSPLIFCVVSKYPEQLDQQLEVLFEQICSILSKSQLENVYKKK 150


>AF036706-1|AAK39287.1|  196|Caenorhabditis elegans Hypothetical
           protein T07A9.1 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/77 (25%), Positives = 31/77 (40%)
 Frame = -1

Query: 597 SRSEATFCIVLTSLRSQLEMAYIVPSHKFSIYTSNVESSVHEHCWVWLGNVLSKQKTQAE 418
           SRS   F + L    S + + +  P H  +I +        EH  V  G+  + ++  A 
Sbjct: 5   SRSPRIFLLSLGRWNSGISVCWYSPRHPRAIISDPAPRIAREHATVLFGDSHASEENNA- 63

Query: 417 SEERRLNFNINFVFHGG 367
              RR NF+      GG
Sbjct: 64  --ARRRNFHNKKTSRGG 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,073,571
Number of Sequences: 27780
Number of extensions: 372492
Number of successful extensions: 860
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)