Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_G19
(717 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 313 8e-86
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 313 8e-86
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 313 1e-85
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 312 2e-85
SB_56| Best HMM Match : Actin (HMM E-Value=0) 312 2e-85
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 312 2e-85
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 257 6e-69
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 2e-24
SB_54| Best HMM Match : Actin (HMM E-Value=0) 100 2e-21
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 86 3e-17
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 68 9e-12
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 40 0.002
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 38 0.006
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 32 0.53
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 5.0
SB_7681| Best HMM Match : Annexin (HMM E-Value=0) 29 5.0
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 28 6.6
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85) 28 8.7
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 313 bits (769), Expect = 8e-86
Identities = 145/158 (91%), Positives = 152/158 (96%)
Frame = -1
Query: 717 YVALDFEQEMATXAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 538
YVALDFEQEM T A+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET
Sbjct: 181 YVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHET 240
Query: 537 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKY 358
YNSIMKCDVDIRKDLYANTV+SGGTTMYPGIADRMQKEI+ALAP T+KIKIIAPPERKY
Sbjct: 241 TYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKY 300
Query: 357 SVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 244
SVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 301 SVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 313 bits (769), Expect = 8e-86
Identities = 145/158 (91%), Positives = 153/158 (96%)
Frame = -1
Query: 717 YVALDFEQEMATXAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 538
YVALDFEQEMAT AAS+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET
Sbjct: 218 YVALDFEQEMATAAASSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHET 277
Query: 537 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKY 358
YNSIMKCDVDIRKDLYANTV+SGG+TM+PGIADRMQKEI+ALAP T+KIKIIAPPERKY
Sbjct: 278 TYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKY 337
Query: 357 SVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 244
SVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 338 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 313 bits (768), Expect = 1e-85
Identities = 145/158 (91%), Positives = 152/158 (96%)
Frame = -1
Query: 717 YVALDFEQEMATXAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 538
YVALDFEQEM T A+S+S+EKSYELPDGQVITIGNERFRCPEAL QPSFLGMES GIHET
Sbjct: 192 YVALDFEQEMQTAASSSSIEKSYELPDGQVITIGNERFRCPEALLQPSFLGMESSGIHET 251
Query: 537 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKY 358
YNSIMKCDVDIRKDLYANTVMSGGTTMYPG+ADRMQKEI+ALAPST+KIKIIAPPERKY
Sbjct: 252 TYNSIMKCDVDIRKDLYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKY 311
Query: 357 SVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 244
SVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 312 SVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 312 bits (766), Expect = 2e-85
Identities = 144/158 (91%), Positives = 152/158 (96%)
Frame = -1
Query: 717 YVALDFEQEMATXAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 538
YVALDFEQEM T A+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET
Sbjct: 219 YVALDFEQEMETAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHET 278
Query: 537 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKY 358
YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKY
Sbjct: 279 TYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKY 338
Query: 357 SVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 244
SVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 339 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 312 bits (766), Expect = 2e-85
Identities = 144/158 (91%), Positives = 152/158 (96%)
Frame = -1
Query: 717 YVALDFEQEMATXAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 538
YVALDFEQEM T A+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET
Sbjct: 218 YVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHET 277
Query: 537 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKY 358
YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKY
Sbjct: 278 TYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKY 337
Query: 357 SVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 244
SVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 338 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 312 bits (766), Expect = 2e-85
Identities = 144/158 (91%), Positives = 152/158 (96%)
Frame = -1
Query: 717 YVALDFEQEMATXAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 538
YVALDFEQEM T A+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET
Sbjct: 219 YVALDFEQEMTTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHET 278
Query: 537 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKY 358
YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIADRMQKEI+ALAP T+KIKIIAPPERKY
Sbjct: 279 TYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKY 338
Query: 357 SVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 244
SVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 339 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 257 bits (630), Expect = 6e-69
Identities = 117/149 (78%), Positives = 133/149 (89%)
Frame = -1
Query: 690 MATXAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCD 511
M A S LEK+YELPDGQVI+IGNERFRCPEA+FQP+FLGME+ GIHE +YN IMKCD
Sbjct: 1 MDIDANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCD 60
Query: 510 VDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSIL 331
VDIRKDLY+N V+SGG+TM+PGIADRMQKEI LA +++K+K+IAPPERKYSVWIGGSIL
Sbjct: 61 VDIRKDLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSIL 120
Query: 330 ASLSTFQQMWISKEEYDESGPGIVHRKCF 244
ASLSTFQQMWI+KEEY E GP IVHRKCF
Sbjct: 121 ASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 109 bits (263), Expect = 2e-24
Identities = 64/178 (35%), Positives = 96/178 (53%), Gaps = 29/178 (16%)
Frame = -1
Query: 717 YVALDFEQEMATXAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 538
YV + EQE +T L + Y LPDG+V+ + ERF PEALFQP + +E G+ E
Sbjct: 222 YVGYNIEQEQKLALETTVLVEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEGVGVAEL 281
Query: 537 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL----------------- 409
++N+I D+D R + Y + V+SGG+TMYPG+ R+++EI L
Sbjct: 282 LFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLEREIKQLYLERVLKGDTSKLSSGM 341
Query: 408 ----APSTI-----KIKI-IAPP-ERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 271
P T K KI I P RK+ V++GG++LA + W++++EY+E G
Sbjct: 342 GMEQIPLTADYLLQKFKIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 99.5 bits (237), Expect = 2e-21
Identities = 44/84 (52%), Positives = 58/84 (69%)
Frame = -1
Query: 717 YVALDFEQEMATXAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 538
Y A+D+E+E+ S E Y LPDGQ I IG+ERFR E LFQPS LG + GIHE+
Sbjct: 2263 YCAMDYERELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQPSLLGRDIDGIHES 2322
Query: 537 VYNSIMKCDVDIRKDLYANTVMSG 466
++ SI KCD+D+R +L+ N V+SG
Sbjct: 2323 IFKSIKKCDIDLRAELFHNIVLSG 2346
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 85.8 bits (203), Expect = 3e-17
Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 17/145 (11%)
Frame = -1
Query: 627 ITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMY 451
+ + ERF PE F P F + + + E V N I C +D+R+ LY N V+SGG+TM+
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMF 255
Query: 450 PGIADRMQKEIT----------------ALAPSTIKIKIIAPPERKYSVWIGGSILASLS 319
R+Q++I + P I+ ++I+ ++Y+VW GGS+LAS
Sbjct: 256 RDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAVWFGGSMLASTP 315
Query: 318 TFQQMWISKEEYDESGPGIVHRKCF 244
F + +K +YDE GP I F
Sbjct: 316 EFYSVCHTKADYDEHGPSICRHNPF 340
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 67.7 bits (158), Expect = 9e-12
Identities = 29/85 (34%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Frame = -1
Query: 567 GMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKI 388
G + G+ + V S+ D+DIR L+ + +++GG T+ G +R+ +E+ + P ++++
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRL 205
Query: 387 KII---APPERKYSVWIGGSILASL 322
K+I + E++++ WIGGSILASL
Sbjct: 206 KLISNNSSVEKRFNPWIGGSILASL 230
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 54.0 bits (124), Expect = 1e-07
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Frame = -1
Query: 561 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPST----- 397
E + + +S++ C +D RK L N V+ GGT M PG R+ +EI L S
Sbjct: 54 EEKSLATALLDSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDK 113
Query: 396 --IK-IKIIAPP-ERKYSVWIGGSILASLSTFQQMWISKEEYDE 277
IK +K+ PP + W+GG+I SL ++E Y +
Sbjct: 114 LFIKTVKMHQPPVNANITAWLGGAIFGSLEVLADRSTTRERYQQ 157
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -1
Query: 717 YVALDFEQEMATXAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFL 568
Y++ D +E+ + L K Y LPDGQ+I+IG E E LF+P L
Sbjct: 849 YLSKDHLKEVHNYKTNEGLTKFYTLPDGQMISIGYECISSMEPLFRPDLL 898
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = -1
Query: 549 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPG 445
I E + +I K D+D+R+ LY+N V+SGG+T++ G
Sbjct: 257 IIEVLAFAIQKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 597 PEALFQPSFLGMESCGIHETV 535
PE +FQPS LG+E GI ET+
Sbjct: 3 PEIIFQPSMLGLEQAGITETM 23
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 31.9 bits (69), Expect = 0.53
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = -3
Query: 553 RHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRS 374
R P+DR + HH RR H +HR H R++R+ +G+ L+ +D
Sbjct: 830 RPPQDRHRRHHHRRRHHN----NKHRKHSREHSRRRHQRKHHKGNDAQETLEEIFED--D 883
Query: 373 PREEVLRMDRWIHPG 329
R+E +D +++ G
Sbjct: 884 ARDEKENVDEFVNGG 898
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -3
Query: 577 FLPGYGIVRHP-RDRVQLHHEV-RRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRA 404
F+ G G++ H + Q+ E R + G +HRH R +HH ++ R+ + + A
Sbjct: 894 FVNGGGMMEHELQSDSQISQETGARENDPGKKHKHRHRRHHHHRRQHNRKIKKHRRKHSA 953
Query: 403 LDHQ 392
H+
Sbjct: 954 RKHE 957
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 335 MDPPIHTEYFLSGGAMILILMVEGARAVISFCILSAIPGYMV-VPPD 472
+DPP+ +Y L+GG ++ ++ FCI G++V PP+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCIFQ---GFVVPTPPE 801
>SB_7681| Best HMM Match : Annexin (HMM E-Value=0)
Length = 426
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = -3
Query: 550 HPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDH--R 377
HP ++ HHE R P H H P ++ E P DH++++
Sbjct: 316 HPPEQ---HHEEEERGVHPPGEHHEEEERGAHPPGQDLEEEERGAHPPGQDHEEEERGAH 372
Query: 376 SPREEVLRMDRWIHP 332
P + +R +HP
Sbjct: 373 PPEQHHEEEERGVHP 387
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 483 NTVMSGGTTMYPGIADRMQKEITALAP 403
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Frame = -3
Query: 553 RHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYR--RQDAEGDHRPR--ALDHQDQ 386
RH R R + R RH RH H R++ R + R R H+
Sbjct: 23 RHERSRHETRQHERSRHKTSRHESSRHKTSRHERSRHKTSRHETSRHERSRHETRQHERS 82
Query: 385 DHRSPREEVLRMDRWIH 335
H++ R E R ++ H
Sbjct: 83 RHKTSRHETSRHEKSRH 99
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = -3
Query: 598 SRGSLPAFLPGYGIVRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 419
+R ++P LPG H R R HH ++H ++ HH Q +
Sbjct: 930 ARPNMPGTLPGNYPESHKRHRHSHHHH------------YQHYQYNHHHDHQSHQHHDSH 977
Query: 418 HRPRALDHQ 392
H LDH+
Sbjct: 978 HHREVLDHK 986
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 28.3 bits (60), Expect = 6.6
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Frame = -3
Query: 556 VRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVP-RYRRQDAEGDHRPRALDHQDQD- 383
V HPR V +H HP V HR +H + RQDA DH + + H QD
Sbjct: 606 VVHPRRDV-VHPRQDVVHPRQDVDHHRQDVDHHRQDVDHHRQDA--DHHRQDVVHPRQDV 662
Query: 382 -HRSPREEVLRMDRWIHPGFPVHLPADVD 299
HR + R D H VH D D
Sbjct: 663 VHRRQDADHRRQDADHHRQDVVHPRQDAD 691
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = -3
Query: 547 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHR 377
PRDR + E RRR P R+ R + Y PR RR+ R R D R
Sbjct: 854 PRDRRRRSPEHRRRREASPPRRDR--KRYDSPPRRRRRSPSPPPRRRRRDSYSPSRR 908
>SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 486 ANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPE 367
AN V+ + + +R+ KE+ L +K KIIAPPE
Sbjct: 44 ANPVIHPARKVPVSLGERLDKELNRLTELGIVKEKIIAPPE 84
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/73 (24%), Positives = 27/73 (36%)
Frame = -3
Query: 553 RHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRS 374
RH R R + R RH RH H R++ E R+ H+ + H
Sbjct: 63 RHERSRHETRQHERSRHKTSRHESSRHKTSRHGRSRHKTSRHETSRHERS-RHETRQHER 121
Query: 373 PREEVLRMDRWIH 335
R + R ++ H
Sbjct: 122 SRHKTSRHEKSRH 134
>SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Frame = -3
Query: 526 HHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDH--RSPREEVLR 353
HHE R P + H H P ++ E P H++++ P E
Sbjct: 154 HHEEEERGVHPPGQHHEEEERGVHPPGQHHEEEERGVHPPGQHHEEEERGVHPPEEHHEE 213
Query: 352 MDRWIHP 332
+R +HP
Sbjct: 214 EERGVHP 220
>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
Length = 647
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = -3
Query: 556 VRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHR 377
++HP ++ H + ++ P + HHVP + +A G+ R Q+ D+
Sbjct: 550 IQHPVEKAIQHAQEKKYQP----ELEKKTIKSHHVPGQDKTEARGEERIAVWSTQNGDYY 605
Query: 376 SPREE 362
R+E
Sbjct: 606 DQRDE 610
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,537,090
Number of Sequences: 59808
Number of extensions: 416264
Number of successful extensions: 1379
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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