Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_G18
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z81575-8|CAB04634.1|  433|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z49131-2|CAA88975.1|  321|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U10438-16|AAO61447.1|  977|Caenorhabditis elegans Glutamate rece...    28   7.9  
U10438-15|AAA19090.3|  908|Caenorhabditis elegans Glutamate rece...    28   7.9  
AF318606-1|AAK01094.2|  977|Caenorhabditis elegans non-NMDA iono...    28   7.9  
AF067950-2|AAG24155.2|  365|Caenorhabditis elegans Serpentine re...    28   7.9  

>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
           protein Y67D8A.1 protein.
          Length = 1020

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 270 WIVSTST-PDLLFHHFSMKSRVYSNYNKLHSTRIY 169
           WI+ + T PDLL H+F+++ R+   Y +    R++
Sbjct: 502 WILWSRTHPDLLVHNFTLRERLEKVYRRACQLRLW 536


>Z81575-8|CAB04634.1|  433|Caenorhabditis elegans Hypothetical
           protein R08H2.9 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 445 CQLGKCISIGTIPNILQH 392
           C+L KC+ +G  PN +QH
Sbjct: 141 CRLQKCLKVGMDPNAVQH 158


>Z49131-2|CAA88975.1|  321|Caenorhabditis elegans Hypothetical
           protein ZC373.3 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 615 CHPCTGVHTLYHRYSHLCINNNIPTTSIQQVLQIPK 722
           CH    + TL+H +SH+  N  + +   Q + ++ K
Sbjct: 92  CHDAPNIPTLFHHFSHVGFNVLVMSEEGQNLREVAK 127


>U10438-16|AAO61447.1|  977|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 2, isoform b protein.
          Length = 977

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 114 LLVELAYAARNFKPGFPQITDANKFQNYCI*LLN 13
           +LV+     +   PG P++   ++F+ YCI LLN
Sbjct: 494 VLVKPFVMLKRRNPGEPELKGNDRFEGYCIDLLN 527


>U10438-15|AAA19090.3|  908|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 2, isoform a protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 114 LLVELAYAARNFKPGFPQITDANKFQNYCI*LLN 13
           +LV+     +   PG P++   ++F+ YCI LLN
Sbjct: 425 VLVKPFVMLKRRNPGEPELKGNDRFEGYCIDLLN 458


>AF318606-1|AAK01094.2|  977|Caenorhabditis elegans non-NMDA
           ionotropic glutamate receptorsubunit GLR-2 protein.
          Length = 977

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 114 LLVELAYAARNFKPGFPQITDANKFQNYCI*LLN 13
           +LV+     +   PG P++   ++F+ YCI LLN
Sbjct: 494 VLVKPFVMLKRRNPGEPELKGNDRFEGYCIDLLN 527


>AF067950-2|AAG24155.2|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein143 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 449 NSPYNILIMWISIFNLL*FLKYNKVSYGKILFIDFKRSMQSLAY 580
           +S  NI++ +ISIF++   L   K SYG  +   F   MQS  Y
Sbjct: 65  SSSINIIMAFISIFDICSMLFRMKQSYGPSIEYIFDPCMQSKWY 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,112,479
Number of Sequences: 27780
Number of extensions: 332191
Number of successful extensions: 823
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)