Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_G17
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0512 + 14913356-14913769,14915907-14916032,14916129-149161... 148 6e-36
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225... 106 2e-23
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86... 76 4e-14
12_02_0659 - 21612325-21612328,21613164-21613199,21613279-216133... 30 1.8
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046... 30 2.3
06_01_0286 - 2094920-2097805 29 3.1
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 29 4.1
12_01_0485 - 3848721-3849227,3852019-3852369 29 5.4
04_01_0266 - 3563075-3563109,3563405-3564754,3564862-3564965,356... 28 9.5
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 28 9.5
>05_03_0512 +
14913356-14913769,14915907-14916032,14916129-14916185,
14916950-14917027,14917681-14917773
Length = 255
Score = 148 bits (358), Expect = 6e-36
Identities = 95/235 (40%), Positives = 120/235 (51%), Gaps = 31/235 (13%)
Frame = -2
Query: 735 IRVAGASRQKHT--LPELPYEYNALEPVISREIMSLHHSKHH----ATYINNLNVAEEKL 574
+ A A+R T LP+LPY+Y ALEP IS EIM LHH KHH A Y L + +
Sbjct: 19 LAAAAAARGVTTVALPDLPYDYGALEPAISGEIMRLHHQKHHATYVANYNKALEQLDAAV 78
Query: 573 AQAQAKG--DIDTIINL--------APALKFNGGGHINHSIFW------------HNLSP 460
A+ A + + I P F G ++ F L
Sbjct: 79 AKGDAPAIVHLQSAIKFNGGGEAKSRPPYPFLAYGFLSFFFFVLFIAGDAGGGGSEELGG 138
Query: 459 NGG--KPSDVLTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQN 286
GG P L A+++DFGS++ L ++S A+QGSGW WL +K+ KKL + T N
Sbjct: 139 EGGGDPPHAKLGWAIDEDFGSFEALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTAN 198
Query: 285 QDPLQAT-TGLVPLFGIDVWEHAYYLQYKNVRADYVKAIFDVANWNDISQRYEKA 124
QDPL LVPL GIDVWEHAYYLQYKNVR DY+ I+ V NW + YE A
Sbjct: 199 QDPLVTKGANLVPLLGIDVWEHAYYLQYKNVRPDYLSNIWKVMNWKYAGEVYENA 253
>06_01_0314 +
2255908-2255979,2256354-2256512,2257021-2257209,
2257390-2257561,2257711-2257784,2257818-2257904,
2257975-2257998,2258100-2258225
Length = 300
Score = 106 bits (255), Expect = 2e-23
Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 28/217 (12%)
Frame = -2
Query: 690 LPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKG-DIDTIINLA---- 526
L + +ALEP IS+ + LH KH Y+++LN ++LA + G ++ +I A
Sbjct: 73 LVFTTDALEPYISKRTVELHWGKHQQDYVDSLN---KQLATSMFYGYTLEELIKEAYNNG 129
Query: 525 -PALKFNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQLSTASVAVQ 355
P ++N + NH FW ++ P GG P + + +EKDFGS+ N + + +++++
Sbjct: 130 NPLPEYNNAAQVWNHHFFWESMQPEGGGSPGRGVLQQIEKDFGSFTNFREEFIRSALSLL 189
Query: 354 GSGWGWLGYNKQMKKLQIATCQNQ-------------------DPLQATTGLVPLFGIDV 232
GSGW WL ++ +K + QN D + L PL +D+
Sbjct: 190 GSGWVWLVLKRKERKFSVVHTQNAISPLALGDINNSIPSINLCDDIPCPLLLQPLINLDL 249
Query: 231 WEHAYYLQYKNVRADYVKAIFD-VANWNDISQRYEKA 124
WEHAYYL YK+ R YV D + +W+ ++ R +A
Sbjct: 250 WEHAYYLDYKDDRRMYVTNFIDHLVSWDTVTLRMMRA 286
>06_01_0109 -
863806-864045,864448-864566,864680-864851,864914-865108,
865179-865388,865738-865926
Length = 374
Score = 75.8 bits (178), Expect = 4e-14
Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 9/199 (4%)
Frame = -2
Query: 690 LPYEYNALEPVISREIMSLHHSKHHATYINNLNV----AE-EKLAQAQAKGDIDTIINLA 526
LPY +ALEP IS+E + H H ++ LN +E E ++ Q A
Sbjct: 129 LPYPSDALEPYISKETVEQHWGVHQNIHVERLNGMIGGSEWEGMSLGQMMLSSFNEGREA 188
Query: 525 PALKFNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQLSTASVAVQG 352
P F I NH +W ++ P GG KP + L K + +DFGS+D + Q A+ G
Sbjct: 189 PHPPFFHAAQIWNHDFYWRSMQPGGGGKPPERLLKFINRDFGSYDGMIRQFMDAASTQFG 248
Query: 351 SGWGWLGYNKQMKKLQIATCQNQDPLQATT-GLVPLFGIDVWEHAYYLQYKNVRADYVKA 175
SGW WL Y K ++ +++ P+ + G + + + + + R+DYV
Sbjct: 249 SGWVWLCY----KTSKLPHVKSRSPIPSDNYGRLVISKSPNAINPLVWGHSDRRSDYVST 304
Query: 174 IFD-VANWNDISQRYEKAL 121
+ + +W + R +KA+
Sbjct: 305 FLEKLVSWETVESRLKKAV 323
>12_02_0659 -
21612325-21612328,21613164-21613199,21613279-21613394,
21613983-21614567
Length = 246
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 223 VLPYIDSEERDQSSGGLQRILVLACSYLQFLH 318
+ PY + EE D +SG ++ VL C +LQF H
Sbjct: 53 IFPYYEHEEIDSASGEKKK--VLPCYFLQFQH 82
>01_06_0405 +
29103723-29103839,29103928-29104012,29104572-29104674,
29104798-29104882,29105414-29105497,29105627-29105730,
29106522-29106783,29106978-29107414,29107637-29107718,
29109913-29110089,29110640-29110732,29110812-29110877,
29110992-29111038,29111165-29111430,29111443-29111845,
29111992-29112376
Length = 931
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 526 CKVDNGVDITFSLCLCEFLFSNV*IVDISRVMFAVMKTHDFTAND 660
C VD V + + CEF V + DISR++F K +F ND
Sbjct: 108 CTVDGHVKL-YRSPFCEFCDEWVEVADISRLLFKFYKGIEFGEND 151
>06_01_0286 - 2094920-2097805
Length = 961
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -2
Query: 702 TLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 535
+L L +N L +I + SLH H NNL+ + +Q Q GD D I
Sbjct: 807 SLESLDLSWNRLSGIIPESMTSLHLLSHLNMSYNNLSGMVPQGSQLQTLGDEDPYI 862
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 82 LNWFNRFF*NYSLERFFISLRYIIPI 159
+ W +RFF + L+R+FIS R +IP+
Sbjct: 108 VRWLSRFF--FYLDRYFISRRSLIPL 131
>12_01_0485 - 3848721-3849227,3852019-3852369
Length = 285
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 337 AWLQQTNEEIANSYMPEPGSSAGHH-WIGPALR 242
AW E I + PG+ AG+H W+GP R
Sbjct: 134 AWKSWLEEHITATGKAPPGNVAGNHTWVGPPQR 166
>04_01_0266 -
3563075-3563109,3563405-3564754,3564862-3564965,
3564967-3565421
Length = 647
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = -2
Query: 396 NLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDV-WEHA 220
+L+ ++T + GW G Q+ L Q + L + GID W+
Sbjct: 323 SLRRLITTMTAGYLNRSRGWSGTIGQLNLLSFRAAQINATDRCLRKLAMMLGIDEWWDST 382
Query: 219 YYLQYKNVRADYVKAIFDVANWNDIS 142
Y + V + + D+ + ND++
Sbjct: 383 CYSWIEEVPMEVKEGAVDMVSRNDLN 408
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 379 VDSFCGSTGLRLGLAWLQQTNEEIANSYM 293
VD GS GL+ + L QT EE+A +++
Sbjct: 2 VDKNDGSEGLKFNTSHLMQTTEEVARAFI 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,310,031
Number of Sequences: 37544
Number of extensions: 486468
Number of successful extensions: 1382
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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