Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_G10
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    29   0.54 
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   2.9  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.0  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    26   5.0  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.6  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.6  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   6.6  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   6.6  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    26   6.6  

>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +3

Query: 546 FHNKLSQLTYVTSSASCPSYPKIL 617
           + N+LS+L YVTSS S P+Y + L
Sbjct: 691 YKNELSELMYVTSSYSQPAYMEFL 714


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 687 WGPPXKSVAXKPSDCTSLWYQRYLKFSGTKDKKPKTSHTLTGSACCGT 544
           W  P K+        +  W +RY      +++KP TS T T S+   T
Sbjct: 460 WAQPAKTQFRTAFTRSREWRRRYRVAPPAENEKPHTSRTNTASSLSST 507


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 276 NSFSPALKSPVAFIV*SFTKKSPMIFLPSVARRSFCSVNRRFFP 407
           N++SPA+KSP A       ++S    +P+ +R S  + N  ++P
Sbjct: 175 NNYSPAVKSPAA------QRRSSSYMVPANSRGSPANYNTPYYP 212


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -1

Query: 404  EESPVDATKGSSRYRRQEDHWRFLGETSND 315
            + +P+D  +G  +Y+R+ +H+R   + +ND
Sbjct: 1607 KSAPLDKLRGFMKYQRRSEHYRNPLKRTND 1636


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 391 LTLQKDRLATDGKKIIGDFLVKLQTIKATGDFSAGEK 281
           L  QKD+   + K+ I D     +T+KA  D S G++
Sbjct: 159 LNEQKDKKIKELKERINDLTYDYETLKANADDSEGKQ 195


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 370 LATDGKKIIGDFLVKLQTIKATGDF 296
           LA DG + IGDF V   T  A+G++
Sbjct: 422 LAGDGNQTIGDFYVMNWTTIASGEY 446


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 592 EAEDVTYVNWLSLLWNGAAKATEMYQPS 509
           + +DV   NWLS+   GA   T  Y PS
Sbjct: 790 KVQDVRKFNWLSMCTPGALPLTFSYFPS 817


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = -3

Query: 687 WGPPXKSVAXKPSDCTSLWYQRYLKFSGTKDKKPKTSHTLTGSACCGTEPLR 532
           +G P + +    +  +S+    +  F G + +K  +   L  S C G E L+
Sbjct: 58  FGLPKRGILKTSTPLSSIKQPNFQSFEGNESEKETSLQELQSSFCSGIENLQ 109


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 319 TIKATGDFSAGEKLFNKYSSLD 254
           T+ AT D   GE+L+N Y  LD
Sbjct: 277 TMIATRDIKKGEQLWNTYGELD 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,083
Number of Sequences: 5004
Number of extensions: 47111
Number of successful extensions: 184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)