Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_G09
         (609 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7VJ63 Cluster: UDP-glucose 4-epimerase; n=30; Epsilonp...    36   0.99 
UniRef50_Q14NM3 Cluster: Hypothetical transmembrane protein; n=1...    32   9.3  

>UniRef50_Q7VJ63 Cluster: UDP-glucose 4-epimerase; n=30;
           Epsilonproteobacteria|Rep: UDP-glucose 4-epimerase -
           Helicobacter hepaticus
          Length = 345

 Score = 35.5 bits (78), Expect = 0.99
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 202 ICVLCGFTRFIFDETCRIFPK-HNSCLPVIHTLPVDL*INWYRKPRIRKHIIFH 360
           +C+ CG T+FIF  T  ++ + H S +P+    P+ L IN Y   ++    I +
Sbjct: 112 LCIECGITKFIFSSTAAVYGEPHTSLIPIDENAPL-LPINPYGSSKMMSERILY 164


>UniRef50_Q14NM3 Cluster: Hypothetical transmembrane protein; n=1;
           Spiroplasma citri|Rep: Hypothetical transmembrane
           protein - Spiroplasma citri
          Length = 1066

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = +3

Query: 90  KINTNVEIT*TFHTSVRNYNNSFNLSTSVKGLN 188
           K+N N++I  TF  +V+N  +++NLS  VKG+N
Sbjct: 786 KLN-NLKINDTFEFTVKNVRSTYNLSIVVKGIN 817


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 515,688,876
Number of Sequences: 1657284
Number of extensions: 9620797
Number of successful extensions: 17163
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17162
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)