Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_G09
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    26   5.0  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   6.5  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    25   6.5  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   8.7  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   8.7  

>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +1

Query: 211 LCGFTRFIFD---ETCRIFPKHNSCLPVIHTLPV 303
           LC FT   FD   ET RIFP +   LP   TLPV
Sbjct: 225 LCQFTP-CFDSAKETDRIFPLYIKYLPPCVTLPV 257


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 120 TFHTSVRNYNNSFNLSTSVKGLNGY*MYLCTLRFHP 227
           + + S+ NY   F++ T ++GL+     L  LRF P
Sbjct: 396 SLNPSITNYRRFFSVGTVIQGLSRLFSSLYGLRFVP 431


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 366 ATMKNNVLSDSWFSI-PIDLQIDW 298
           AT   N+ SDS F+  P D  +DW
Sbjct: 281 ATQMKNITSDSSFTFCPTDKDVDW 304


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 194 LDVFVYSAVSPALYLMKHVAFFQNITVACL*FIHYQSICRSI 319
           +D + +  +SP +YL+  +A   N T+       Y SI  SI
Sbjct: 667 IDSYDHVPISPLIYLLHSLALLTNGTLFSTVHAAYSSILSSI 708


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 375 RTSSLNTKYSNPFSLLCDRVTMNCET 452
           R +S ++ YS    LLC  +T++C T
Sbjct: 170 RLNSSSSHYSKDVPLLCGSLTIDCPT 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,590
Number of Sequences: 5004
Number of extensions: 45546
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)