Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_G09
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0126 - 947072-948687,949454-949627,950117-951572                 27   8.8  
04_04_0941 - 29544252-29544355,29545155-29545299,29545637-295457...    27   8.8  

>07_01_0126 - 947072-948687,949454-949627,950117-951572
          Length = 1081

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 17   LRLHNRISQNNYLFTHKSKHTCYLKNKY*CR 109
            +R  N+IS + YL  H   HTC ++N   CR
Sbjct: 984  VRTVNKIS-SEYLVIHDEYHTCSVQNMVLCR 1013


>04_04_0941 -
           29544252-29544355,29545155-29545299,29545637-29545775,
           29545836-29545893,29546012-29546123,29546311-29546484,
           29547276-29547450,29547531-29547589,29548008-29548109,
           29548178-29548212,29549017-29549111,29549638-29549686,
           29549754-29549812,29549978-29550051,29550204-29550296,
           29550389-29550769
          Length = 617

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 206 VYSAVSPALYLMKHVAFFQNITVACL 283
           +Y+ ++PA+++ KH A F  +  ACL
Sbjct: 355 LYALLTPAVFMAKHRAVFLQLLDACL 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,858,650
Number of Sequences: 37544
Number of extensions: 231183
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)