Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_G09
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   9.4  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 466 YLYFQVSQFIVTLSQSKLNGFEYFVLRLEVRRVCYN 359
           Y YF     ++  + +  N      LRL+ RR C N
Sbjct: 462 YTYFDKCDTLINNAVAVENFKGGMYLRLKARRACMN 497



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 469 FYLYFQVSQFIVTL 428
           FYL+ ++ +F VTL
Sbjct: 539 FYLFMEMDRFAVTL 552


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 466 YLYFQVSQFIVTLSQSKLNGFEYFVLRLEVRRVCYN 359
           Y YF     ++  + +  N      LRL+ RR C N
Sbjct: 462 YTYFDKCDTLINNAVAVENFKGGMYLRLKARRACMN 497



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 469 FYLYFQVSQFIVTL 428
           FYL+ ++ +F VTL
Sbjct: 539 FYLFMEMDRFAVTL 552


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
          protein.
          Length = 74

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 26 HNRISQNNYLFTHKSKHT 79
          H R +++++L TH   HT
Sbjct: 16 HKRFTRDHHLKTHMRLHT 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,686
Number of Sequences: 438
Number of extensions: 3634
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)