Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_G07
(440 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 28 0.73
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 28 0.73
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 28 0.73
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 27 1.3
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 26 2.2
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 26 2.2
SPBC2D10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 5.2
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 25 5.2
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ... 25 6.8
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 24 9.0
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 27.9 bits (59), Expect = 0.73
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -3
Query: 336 IVLMALAYVSAHKEAVTLCGRNLANARVAVCYGAEYVDKRTSGNTLFDDFEDVDLHGDWP 157
I+ L+Y + HK L L +R A+ Y + T+G+ +F +L+ +WP
Sbjct: 220 ILTTCLSYFTEHKSVNLLY--KLVTSRQAIKYLEHILRTNTNGSKIFTKSPVKNLYLNWP 277
Query: 156 -WTGRRGALSADWTRYKRQGIVN 91
G+L ++T + + G N
Sbjct: 278 QLVLDYGSLLCNFTSFPKAGDQN 300
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 27.9 bits (59), Expect = 0.73
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +1
Query: 223 INVFCSIANCNPCVCKVPSTQSDCFLVR*DVS*RHQHYHHREFHVKN 363
I + +I +C+P ++ S C+L++ D+S + Y +H+K+
Sbjct: 388 IEYYQTILDCDPKQGEIWSALGHCYLMQDDLSRAYSAYRQALYHLKD 434
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 27.9 bits (59), Expect = 0.73
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = -3
Query: 321 LAYVSAHKEAVTLCGRN-LANARVAVCYGAEYVDKRTSG---NTLFDDFEDVD 175
L Y+ +H V + + + N + C+GA+Y D+R + +FD+F++++
Sbjct: 1017 LRYLFSHSFLVIIFACSVILNLSLMFCFGAKYWDERQNNKFVGQVFDEFKNIE 1069
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 27.1 bits (57), Expect = 1.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 125 SAERAPRRPVHGQSPCRSTSSKSSNN 202
+A P++P H Q+P S+SS SS +
Sbjct: 118 NARDIPQQPSHSQNPSSSSSSSSSQS 143
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 26.2 bits (55), Expect = 2.2
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -1
Query: 248 FAMEQNTLINGHRETHYSMISKM*TCTAIGRGLAVEAPSPLTGPATSAKESSTNAVSNHA 69
+A+ + +R TH + K AI ++ E ++GP + KE N+ +N
Sbjct: 196 YAIPEKPTEKSYRPTHRAAFRK----DAIAFDMSYEPLFCISGPYEALKEKFGNSFANGL 251
Query: 68 PPTY 57
PP +
Sbjct: 252 PPVF 255
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 26.2 bits (55), Expect = 2.2
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -3
Query: 216 TSGNTLFDDFEDVDLHGDWPWTGRRGALSADWTRYKRQGIVNECCFKPCTTDVLLKY 46
T+ N +D ED D W WT + WT + G++ ++P +V L Y
Sbjct: 165 TTQNRSPNDEEDEDEDYKW-WTSENIDDTQKWTTLEHNGVIFAPPYEPLPKNVKLIY 220
>SPBC2D10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 105
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 98 IPWRL*RVQSAERAPRRPVHGQSPCRSTSSKSSNN 202
+P R R +SA +AP +HG+ + T K N
Sbjct: 1 MPHRNDRRKSASKAPNAIIHGRVASKKTIKKQLRN 35
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 116 RVQSAERAPRRPVHGQSPCRSTSSKSSNN 202
RV + R P +P+ Q P +SSK + N
Sbjct: 48 RVSTTRRTPSKPIRSQ-PLTPSSSKGAGN 75
>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 512
Score = 24.6 bits (51), Expect = 6.8
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +3
Query: 24 LIWLIFNNISRVRRWCMV 77
L+W+I++ I R R+W +
Sbjct: 284 LVWVIYDYIFRTRKWSTI 301
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 24.2 bits (50), Expect = 9.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 77 LKQHSLTIPWRL*RVQSAERAPRRPVHGQSPCRSTSSKSSNN 202
+K H+ T+ ++ A R PRR GQ +ST+++ SNN
Sbjct: 478 VKDHAKTLLKEWESLEIAYRIPRRK-PGQVAPQSTNAEPSNN 518
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,807,820
Number of Sequences: 5004
Number of extensions: 34563
Number of successful extensions: 99
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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