Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_G07
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0169 + 14397380-14397652,14398317-14398874,14399593-143998...    29   2.2  
11_08_0064 - 28127955-28128860                                         28   2.9  
02_05_0593 - 30217432-30218232                                         28   3.8  
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998...    27   5.1  
12_01_0505 - 4005211-4005234,4005235-4005432,4005522-4006006,400...    27   6.7  
08_02_1162 - 24811327-24812162,24815969-24816028,24816526-248167...    27   6.7  
02_04_0172 - 20595357-20596129,20596994-20597138                       27   8.8  

>11_04_0169 +
           14397380-14397652,14398317-14398874,14399593-14399823,
           14399924-14400064,14401051-14401248,14401319-14401591,
           14401959-14401976
          Length = 563

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 164 SPCRSTSSKSSNNVFPDVRLSTYSAP*QTATLAFARFRPHRVTASLCAET*ANA 325
           +PC       S +  P    S+ SAP  ++  +F+R  P RV  ++ A T A A
Sbjct: 11  APCPHAHHHHSTSSLPSSSSSSTSAPSSSSRCSFSRGGPFRVHCAVTATTSAAA 64


>11_08_0064 - 28127955-28128860
          Length = 301

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 153 TGRRGALSADWTRYKRQGIVNECCFKPCTTDVLLKY 46
           TG+ G ++  W R K +G + E C     T V++ +
Sbjct: 28  TGKTGQIAVFWGRNKTEGSLKEACDTGLYTTVIISF 63


>02_05_0593 - 30217432-30218232
          Length = 266

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 149 AVEAPSPLTGPATSAKESSTNAVSNHAPP 63
           A EAPS     AT +K +ST+A S H PP
Sbjct: 176 AAEAPSS----ATESKPNSTDASSKHGPP 200


>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
            21699927-21699992,21701064-21701203,21701424-21701473,
            21701608-21702045,21702757-21702839,21702941-21702977,
            21703366-21703457,21703531-21703615,21703950-21704029,
            21704049-21704105,21704350-21704747,21706322-21707223,
            21707331-21707421,21708123-21710273,21710375-21710813,
            21711180-21711299
          Length = 1836

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 154  PRPIAVQVYIFEIIE*CVSRCPFINVFC--SIANCNPC 261
            P P ++Q+++ E+ E       F  VFC  S  NCN C
Sbjct: 1460 PLPESLQLHLLELYELHYQMITFGKVFCTKSKPNCNAC 1497


>12_01_0505 -
           4005211-4005234,4005235-4005432,4005522-4006006,
           4006533-4006700,4007128-4007203,4007327-4007409,
           4007511-4007589,4007685-4007753,4008174-4008266,
           4008668-4008713,4009398-4009522
          Length = 481

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 12  FFQQLIW-LIFNNISRVRRWCM 74
           F   ++W L+ NNI  + RWC+
Sbjct: 431 FLADIVWTLLQNNIGNLNRWCL 452


>08_02_1162 -
           24811327-24812162,24815969-24816028,24816526-24816725,
           24817436-24817657,24817989-24818312,24818852-24818988
          Length = 592

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 149 AVEAPSPLTGPATSAKESSTNAVSNHAPPT 60
           A +A SPL G ++SAK  +    S+ +PP+
Sbjct: 537 ASDAASPLPGKSSSAKAKADEKKSSSSPPS 566


>02_04_0172 - 20595357-20596129,20596994-20597138
          Length = 305

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 106 ALVAGPVSGEGASTASPRPIAV 171
           ++V GPV GEGA T SP P +V
Sbjct: 142 SMVDGPVMGEGAPT-SPSPTSV 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,176,272
Number of Sequences: 37544
Number of extensions: 246041
Number of successful extensions: 853
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)