Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_G07
(440 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024772-1|AAF60536.2| 242|Caenorhabditis elegans Hypothetical ... 31 0.49
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 29 1.5
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 29 1.5
Z70683-4|CAC42282.1| 109|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 29 2.0
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 2.0
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 2.0
AF070472-1|AAC33275.1| 109|Caenorhabditis elegans insulin-like ... 29 2.0
AL032639-5|CAA21629.1| 342|Caenorhabditis elegans Hypothetical ... 27 6.0
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation... 27 8.0
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini... 27 8.0
AF125955-11|AAK71367.1| 178|Caenorhabditis elegans Hypothetical... 27 8.0
>AC024772-1|AAF60536.2| 242|Caenorhabditis elegans Hypothetical
protein Y40C5A.1 protein.
Length = 242
Score = 30.7 bits (66), Expect = 0.49
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 253 NPCVCKVPSTQSDCFLVR*DVS*RHQHYHHREFHVKNLLYYDLRCGTMGRL 405
N + + PS S VR + + RH H+HH + ++N +++D C R+
Sbjct: 123 NVPIIRTPSQHSIHQSVRFNDNKRHHHHHHHD-SIRNFVHHDTPCRNCFRI 172
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -1
Query: 221 NGHRETHYSMISKM*TCTAIGRGLAVEAPSPLTGPATSAKESSTNAVSNH 72
N E M++K T T I G + P+P P ++ +SS++ +S+H
Sbjct: 25 NSQEENDCDMLAKPQTPTIIIPGHMDDTPNPAGSPHDASIKSSSSTISDH 74
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -1
Query: 221 NGHRETHYSMISKM*TCTAIGRGLAVEAPSPLTGPATSAKESSTNAVSNH 72
N E M++K T T I G + P+P P ++ +SS++ +S+H
Sbjct: 25 NSQEENDCDMLAKPQTPTIIIPGHMDDTPNPAGSPHDASIKSSSSTISDH 74
>Z70683-4|CAC42282.1| 109|Caenorhabditis elegans Hypothetical
protein F13B12.5 protein.
Length = 109
Score = 28.7 bits (61), Expect = 2.0
Identities = 25/102 (24%), Positives = 40/102 (39%)
Frame = -3
Query: 348 FTVMIVLMALAYVSAHKEAVTLCGRNLANARVAVCYGAEYVDKRTSGNTLFDDFEDVDLH 169
F + ++ L+ + ++ LCG L +AVC ++ +G T F
Sbjct: 13 FFGFLAILLLSSPTPSDASIRLCGSRLTTTLLAVCR-----NQLCTGLTAFKR------S 61
Query: 168 GDWPWTGRRGALSADWTRYKRQGIVNECCFKPCTTDVLLKYC 43
D + L + KR GI ECC K C+ L +C
Sbjct: 62 ADQSYAPTTRDLFHIHHQQKRGGIATECCEKRCSFAYLKTFC 103
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 149 PVHGQSPCRSTSSKSSNNVFPDVRLSTYSAP*QTATLAFARFRPHR 286
P P ++SS SN+ +PD LS+ SAP + L + + +R
Sbjct: 66 PTSSHHPPLNSSSHHSNHNYPDTTLSSTSAPSTSNYLTTSTYSDNR 111
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 137 PSPLTGPATSAKESSTNAVSNHAPPTYS*NIVKY*PN 27
PSP P TSA+ S T+ + + PTYS Y P+
Sbjct: 1808 PSPSEQPGTSAQYSPTSPTYSPSSPTYSPASPSYSPS 1844
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 137 PSPLTGPATSAKESSTNAVSNHAPPTYS*NIVKY*PN 27
PSP P TSA+ S T+ + + PTYS Y P+
Sbjct: 1815 PSPSEQPGTSAQYSPTSPTYSPSSPTYSPASPSYSPS 1851
>AF070472-1|AAC33275.1| 109|Caenorhabditis elegans insulin-like
peptide protein.
Length = 109
Score = 28.7 bits (61), Expect = 2.0
Identities = 25/102 (24%), Positives = 40/102 (39%)
Frame = -3
Query: 348 FTVMIVLMALAYVSAHKEAVTLCGRNLANARVAVCYGAEYVDKRTSGNTLFDDFEDVDLH 169
F + ++ L+ + ++ LCG L +AVC ++ +G T F
Sbjct: 13 FFGFLAILLLSSPTPSDASIRLCGSRLTTTLLAVCR-----NQLCTGLTAFKR------S 61
Query: 168 GDWPWTGRRGALSADWTRYKRQGIVNECCFKPCTTDVLLKYC 43
D + L + KR GI ECC K C+ L +C
Sbjct: 62 ADQSYAPTTRDLFHIHHQQKRGGIATECCEKRCSFAYLKTFC 103
>AL032639-5|CAA21629.1| 342|Caenorhabditis elegans Hypothetical
protein Y38F1A.4 protein.
Length = 342
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 345 TVMIVLMALAYVSAHKEAVTLCGRNLANARVAVCYGAEYVDKRTSG 208
T +IV +AY+S + + N NA+ VC+ A+ + K G
Sbjct: 138 TFLIVAGPIAYISYNSRIYSFTIENKRNAKQFVCFLADSIIKGVCG 183
>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
germline protein5 protein.
Length = 1200
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -3
Query: 366 EIFNMKFTVMIVLMALAYVSAHKEAVTLCGRNLANARVAVCYG 238
++ +MK I L + HK + CGR+++ + A+C G
Sbjct: 1043 QVRSMKRAQDIRKQLLGIMDRHKLLMVSCGRDVSRVQKAICSG 1085
>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
protein MOG-5 protein.
Length = 1200
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -3
Query: 366 EIFNMKFTVMIVLMALAYVSAHKEAVTLCGRNLANARVAVCYG 238
++ +MK I L + HK + CGR+++ + A+C G
Sbjct: 1043 QVRSMKRAQDIRKQLLGIMDRHKLLMVSCGRDVSRVQKAICSG 1085
>AF125955-11|AAK71367.1| 178|Caenorhabditis elegans Hypothetical
protein F46E10.11 protein.
Length = 178
Score = 26.6 bits (56), Expect = 8.0
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +1
Query: 124 VSGEGASTASPRPIAVQVYIF-EIIE*CVSRCPFINVFCSIANCNPCVCKVPSTQSDCFL 300
VS E A PRP Y+ +S P N CS NCN C ST S C
Sbjct: 23 VSQESTEVARPRPKRQIYYLCGNFPNQYLSLTP-CNSGCSTCNCNTATC---STSSYCQQ 78
Query: 301 VR 306
+R
Sbjct: 79 IR 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,232,872
Number of Sequences: 27780
Number of extensions: 204943
Number of successful extensions: 719
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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