Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_G06
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    27   2.8  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   8.6  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   8.6  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   8.6  

>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 518 DHSSVK-KHFRHKEPEPKERYLALLKQTNKQTV 613
           DH+  K K F  +  + KERY A LKQ+ ++ V
Sbjct: 330 DHTDFKPKSFSDERRKAKERYEACLKQSGERLV 362


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 567 FGSGSLCLKCFLTDE*SLLITVSYHAKNPTARY 469
           FG+G + + C L D  +L   +     +P AR+
Sbjct: 643 FGTGEMYMDCLLYDLRTLYSEIEIRVSDPVARF 675


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 572 RYLALLKQTNKQTVKNTLHIFISFFKREL 658
           RYL    QT   ++ N  HIF +FF   L
Sbjct: 387 RYLYCKLQTQNPSLANDTHIFNTFFYNRL 415


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 289 DICITGKTLSNSWSTCRLLRPRQTVTLIFSEKLVYLSLRFMAF 417
           D+  TGK +  +W    ++RPR+  T+  +++L+    R   F
Sbjct: 705 DVSSTGK-IRGTWIGWAVIRPRKAYTMKEADELLQTDARLRLF 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,172
Number of Sequences: 5004
Number of extensions: 59414
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)