Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_G04
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0D854 Cluster: Chromosome undetermined scaffold_40, wh...    34   3.7  
UniRef50_UPI00015A52A9 Cluster: UPI00015A52A9 related cluster; n...    33   6.5  

>UniRef50_A0D854 Cluster: Chromosome undetermined scaffold_40, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_40,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1973

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
 Frame = -3

Query: 226 KQCHANYRNCNNL-----KYCSVLRIRNYMLIMCCANISRLLV*FSY*NTSRFISIYVC- 65
           ++C+ N   C+NL      YC ++ I   M    CAN+S   V FS  +T ++ +  +C 
Sbjct: 63  RKCYWNNNVCSNLTLKTTNYCELIGIEVCMSTPGCANVSEKCVSFSGCSTYQYHTNEICQ 122

Query: 64  NVTTKIWSDFLVC 26
           N++T   +D   C
Sbjct: 123 NISTSCTTDGEQC 135


>UniRef50_UPI00015A52A9 Cluster: UPI00015A52A9 related cluster; n=2;
            Danio rerio|Rep: UPI00015A52A9 UniRef100 entry - Danio
            rerio
          Length = 2279

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 157  YMLIMCCANISRLLV*FSY*NTSRFISIYVCNVTTKIWSDFLVCNN 20
            ++ ++CC  +S L + F+Y +   F  +YVC  +   W D   C N
Sbjct: 936  FIYLLCCIYLSCLFIIFTYYSYVDFSYLYVCVQSLVRWCDSSPCKN 981


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,442,278
Number of Sequences: 1657284
Number of extensions: 10403883
Number of successful extensions: 17582
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17577
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)