Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_G04
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    24   3.1  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   4.4  

>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 23.8 bits (49), Expect(2) = 3.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 312  GILRHVISVVNNEGSKKISYRT 247
            G + HV++V    G++K+SY T
Sbjct: 1379 GAIYHVVTVCYYNGNQKLSYDT 1400



 Score = 21.0 bits (42), Expect(2) = 3.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 144  CAVLIFLDYWYSF 106
            C + IF+ +W SF
Sbjct: 1420 CVISIFIVFWISF 1432


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 596 VCFSCSISYFIIRMANGI--INHTNLFMCQ 513
           +C    I +FII +ANG+  + H   F C+
Sbjct: 127 ICLWSMIFHFIIAIANGVYFVKHITKFSCE 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,294
Number of Sequences: 5004
Number of extensions: 50206
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)