Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_G02
(468 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.9
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 26 3.3
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 25 4.4
SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyce... 25 4.4
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 4.4
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 5.8
SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|... 25 5.8
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc... 25 5.8
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb... 25 7.6
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 7.6
>SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 304 DDFIVIEAKHEEKKDEQGFISRHFVRKYKLPQGSQPNKI 188
D+F+ HE KK + F+ ++ K K +PNK+
Sbjct: 11 DEFVAKLLIHESKKKNKSFVDHGYIEKEKTK--LRPNKV 47
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 3.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 77 FEIMNEKKGNLIMNIFLFSTIRRHK 3
FE++N+ G+ I N+ L I HK
Sbjct: 423 FELINQTDGDAITNLLLVEVILAHK 447
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 4.4
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 293 NKIIGDLYLNLFSGKIFNQ*IDLQSVFLCFH--NISVVPWKVLEPINR 430
N + G ++ +G +FN +D S+ + N+S PW +EP R
Sbjct: 440 NLLFGSQLMDPVTGVVFNDQMDDFSIPGASNAFNLSPSPWNFIEPFKR 487
>SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 25.4 bits (53), Expect = 4.4
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -3
Query: 328 EQIQVKVADDFIVIEAKHEEKKDEQGFISRHFVRKYKLPQGSQPNKIT-STLSADGVLKI 152
EQ+Q K+ + + E + G + R F KY L GS+P+ +T ++ D K
Sbjct: 116 EQVQ-KLEEKMSSLVVNDPELAQKVGRL-RQFFEKYGLEAGSKPSPLTILKITRDPEFKQ 173
Query: 151 VVPKETAVLKDTAI 110
+ T + K + I
Sbjct: 174 LAETITEIFKKSGI 187
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 4.4
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = -3
Query: 448 MEFVLRSVDWLENLPWHDGNIVKTQKDRLEINLLVKDFAAEQIQVKVADDFIVIEAKHEE 269
+E + SVD N+P + + KDR E + +D E++ ++ D I K EE
Sbjct: 481 LEVLQISVDDTSNIPEIIARLSEKLKDREESEAVTEDL-IEEVVNRLRDK--AIHKKAEE 537
Query: 268 KKDEQGFISR 239
K+ ++ I R
Sbjct: 538 KRADERRIRR 547
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 462 NSAGRWNLYFVLLIGSRTFHGT 397
N WNL F LL R+FHG+
Sbjct: 596 NENNFWNLKFNLLTMLRSFHGS 617
>SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 5.8
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 79 LASLSPRMPQVSQYLSK--QPFLLAPLFSTHHQ 171
L RM Q+ + K + +LAP+F HHQ
Sbjct: 23 LIEFQDRMRQIENTMGKGTKTEMLAPIFQLHHQ 55
>SPBC1703.08c |||5-formyltetrahydrofolate
cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 204
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 317 LNLFSGKIFNQ*IDLQSVFLCFHNISVVPWK 409
LN GK+ + ID QS+ +C + + WK
Sbjct: 12 LNSSLGKLADHIIDSQSISICKQVVELPEWK 42
>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 7.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 105 TGIAVSFKTAVSFGTTIFNTPSADSVDVIL 194
T I + FKT S+G+TI N D I+
Sbjct: 237 TAIMMQFKTPPSYGSTIVNIGGIAMKDKII 266
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 24.6 bits (51), Expect = 7.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 156 K*WCQKKRLF*KILRYLWHTRTQRSQIR 73
K W + R F +L YLW T+ R Q +
Sbjct: 237 KSWAEYFRSFSTLLPYLWPTKDYRLQFQ 264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,377
Number of Sequences: 5004
Number of extensions: 35898
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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