Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_G02
(468 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0478 + 8775892-8776377 40 0.001
03_02_0485 - 8808139-8808618 39 0.002
03_02_0484 + 8805053-8805538 38 0.003
01_01_0227 + 1933247-1933699 38 0.003
03_02_0483 - 8804021-8804485 38 0.004
06_01_1017 - 7951985-7952425 36 0.022
01_01_0229 - 1943473-1943922 33 0.15
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 32 0.20
02_05_0811 + 31939414-31939660,31939766-31940181 31 0.61
03_05_0898 + 28610123-28610203,28611190-28611271,28611666-286117... 30 1.1
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 28 3.3
05_03_0317 - 12249228-12249275,12263876-12264518,12264954-122666... 27 10.0
02_05_0494 + 29486960-29487454 27 10.0
>03_02_0478 + 8775892-8776377
Length = 161
Score = 39.5 bits (88), Expect = 0.001
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Frame = -3
Query: 328 EQIQVKVADDFIVI-----EAKHEEKKDEQGFISRH---FVRKYKLPQGSQPNKITSTLS 173
E+++V+V D I+ + EEK D+ + R F+R+++LP ++P +I +++
Sbjct: 77 EEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASME 136
Query: 172 ADGVLKIVVPKETAVLKD 119
+GVL + VPKE A D
Sbjct: 137 -NGVLTVTVPKEEAKKPD 153
>03_02_0485 - 8808139-8808618
Length = 159
Score = 38.7 bits (86), Expect = 0.002
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 8/72 (11%)
Frame = -3
Query: 328 EQIQVKVADDFIVI-----EAKHEEKKDEQGFISRH---FVRKYKLPQGSQPNKITSTLS 173
E+++V+V D I+ + EEK D+ + R F+R+++LP+ ++P +I +++
Sbjct: 75 EEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASME 134
Query: 172 ADGVLKIVVPKE 137
+GVL + VPKE
Sbjct: 135 -NGVLTVTVPKE 145
>03_02_0484 + 8805053-8805538
Length = 161
Score = 38.3 bits (85), Expect = 0.003
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 8/72 (11%)
Frame = -3
Query: 328 EQIQVKVADDFIVI-----EAKHEEKKDEQGFISRH---FVRKYKLPQGSQPNKITSTLS 173
E+++V+V D ++ + EEK D+ + R F+R+++LP+ ++P +I +++
Sbjct: 77 EEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASME 136
Query: 172 ADGVLKIVVPKE 137
+GVL + VPKE
Sbjct: 137 -NGVLTVTVPKE 147
>01_01_0227 + 1933247-1933699
Length = 150
Score = 38.3 bits (85), Expect = 0.003
Identities = 31/112 (27%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Frame = -3
Query: 427 VDWLENLPWH--DGNIVKTQKDRLEINLLVKDFAAEQIQVKVADDFIVIEAKHEEKKDEQ 254
VDW E H ++ +KD+ ++ V+D I + A + V + K++E+
Sbjct: 42 VDWKETPTAHVFTADLPGVRKDQAKVE--VEDGGVLVISGERAREEDV-DGKNDERWHHV 98
Query: 253 GFISRHFVRKYKLPQGSQPNKITSTLSADGVLKIVVPK-ETAVLKDTAIPVA 101
S F R+++LP+G++ +++++++ +GVL + VPK ET + AIP++
Sbjct: 99 ERSSGKFQRRFRLPRGARVDQVSASMD-NGVLTVTVPKEETKKPQLKAIPIS 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/72 (30%), Positives = 45/72 (62%), Gaps = 8/72 (11%)
Frame = -3
Query: 328 EQIQVKVADDFIVIEA-----KHEEKKDEQGFISRH---FVRKYKLPQGSQPNKITSTLS 173
E+++V+V D ++ + + EEK D+ + R F+R+++LP+ ++P +I +++
Sbjct: 70 EEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASME 129
Query: 172 ADGVLKIVVPKE 137
+GVL + VPKE
Sbjct: 130 -NGVLTVTVPKE 140
>06_01_1017 - 7951985-7952425
Length = 146
Score = 35.5 bits (78), Expect = 0.022
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Frame = -3
Query: 430 SVDWLENLPWHDGNIVKTQKDRLEINLLVKDFAAEQIQVKVADDFIVIEAKHEEKKDEQG 251
++DW+E H I + ++ + V+D + V+ A E + E +KD
Sbjct: 31 AMDWVETPTSHVLRINVPGLGKDDVKVQVED--GNVLTVRGAAPHAAAEKEREREKDVVW 88
Query: 250 FISRH----FVRKYKLPQGSQPNKITSTLSADGVLKIVVPKETAVLKDTAIPVA 101
++ F R+ LP + +I +++ +GVL +VVPKE A + P+A
Sbjct: 89 HVAERGRPEFAREVALPAEVRVEQIRASVD-NGVLTVVVPKEPAPARPRTRPIA 141
>01_01_0229 - 1943473-1943922
Length = 149
Score = 32.7 bits (71), Expect = 0.15
Identities = 17/71 (23%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = -3
Query: 328 EQIQVKVADDFIVI-----EAKHEEKKDEQGFISR---HFVRKYKLPQGSQPNKITSTLS 173
E+++V+V + +++ + E+K D+ + R F+R+++LP+ ++ +++ +++
Sbjct: 65 EEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASME 124
Query: 172 ADGVLKIVVPK 140
+GVL + VPK
Sbjct: 125 -NGVLTVTVPK 134
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/71 (25%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Frame = -3
Query: 328 EQIQVKVADDFIVI-----EAKHEEKKDEQGFISR---HFVRKYKLPQGSQPNKITSTLS 173
E+++V+V + +++ + E+K D+ + R F+R+++LP+ ++ +++ + L
Sbjct: 66 EEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLE 125
Query: 172 ADGVLKIVVPK 140
+GVL + VPK
Sbjct: 126 -NGVLTVTVPK 135
>02_05_0811 + 31939414-31939660,31939766-31940181
Length = 220
Score = 30.7 bits (66), Expect = 0.61
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = -3
Query: 382 KTQKDRLEINLLVKDFAAEQIQVKVADDFIVIEAKHEEK--KDEQGFISRHFVRKYKLPQ 209
K ++ L + + + E ++V + +VI+ + E++ +DE +R+ R P+
Sbjct: 124 KESEEALHLRVDMPGLGKEHVKVWAEQNSLVIKGEGEKEAGEDEGAAPARYSGRIELAPE 183
Query: 208 GSQPNKITSTLSADGVLKIVVPK 140
+ ++I + + +GVLK+VVPK
Sbjct: 184 VYRMDQIKAEMK-NGVLKVVVPK 205
>03_05_0898 +
28610123-28610203,28611190-28611271,28611666-28611721,
28612253-28612366,28612484-28612546,28612633-28612752,
28612850-28612950,28613097-28613156,28613243-28613342,
28613421-28613575,28613661-28613756,28614269-28614403,
28614510-28614573,28614648-28614729,28615038-28615213,
28615302-28615378,28615637-28615769,28615939-28616055,
28616394-28616398,28616564-28616684,28616711-28617751
Length = 992
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = -3
Query: 391 NIVKTQKDRLEINLLVKDFAAEQIQVKVADDFIVIEAKHEEKKDEQGFISRHFVRKYKLP 212
N+V Q ++N L+K+ ++ V AD+F E K G +S+H +Y
Sbjct: 508 NLVSMQSSLSDVNKLIKEIRSDVSDVVAADEF-------EYKDPVDGSVSKHQGVRYLFG 560
Query: 211 QGSQ-PNKITSTLSADGVLKIVV 146
GS+ +++ T S +++ +
Sbjct: 561 DGSRLVFRLSGTGSVGATIRVYI 583
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 346 VKDFAAEQIQVKVADDFIVIEAKHEEKKDEQGFISRHFVRKYK 218
V+D ++ +KVA + KH + D+ + RH++ KYK
Sbjct: 38 VQDMKSKMTDLKVALSYA---DKHSRETDDDALVLRHWLNKYK 77
>05_03_0317 - 12249228-12249275,12263876-12264518,12264954-12266682,
12283603-12283975,12284119-12284715
Length = 1129
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 401 PWKVLEPINRTKYKFHRPAEF 463
P+KVL IN YK PA+F
Sbjct: 1029 PFKVLAKINENAYKIDLPADF 1049
>02_05_0494 + 29486960-29487454
Length = 164
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = -3
Query: 241 RHFVRKYKLPQGSQPNKITSTLSADGVLKIVVPK 140
R V +++LP+ + ++ ++ + ADGVL + VPK
Sbjct: 106 RAAVTQFRLPEDAAADEASARM-ADGVLTVTVPK 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,360,978
Number of Sequences: 37544
Number of extensions: 204700
Number of successful extensions: 558
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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