Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_F24
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   4.4  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    25   5.8  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   5.8  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    25   5.8  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   7.6  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   7.6  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    25   7.6  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    25   7.6  

>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 261  RVCELHRKDIHHVCRCRSSFLI 196
            R+   +RK IH  CR  SS L+
Sbjct: 1245 RISSFYRKSIHKKCRVGSSLLV 1266


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 407 PSESFQKRISGASEKDIVHSGLDYTME 327
           P+E  ++R+ G SE   + +G+D T E
Sbjct: 365 PAEILKERLPGISETAAIFAGVDVTKE 391


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 110 IGLNLRSTL-EFLRKYYTDNTLKLV 181
           +GL++R  L +F  KYY+ N +KLV
Sbjct: 193 LGLDVRQELLKFYDKYYSANIMKLV 217


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 68  RVVISLYCKMKEINIGLNLRST-LEFLRK 151
           R  +S Y  MK I IG+N+R T  EF ++
Sbjct: 272 RYCLSQYILMKGIGIGINIRHTRCEFTKQ 300


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 533 NHVSYGRLTFKYERESNYHLLESVQESLERR 441
           NH S G+L  K E+E  Y +   + + L+RR
Sbjct: 50  NHSSTGKLHAKREKEPVYLMPSPLTDDLKRR 80


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 554 FEWLKNLNHVSYGRLTFKYERESNYHLLE 468
           F  LK+L HVS+    F+   + +  LLE
Sbjct: 22  FSNLKSLKHVSHSETDFEVSNDEDNQLLE 50


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = -1

Query: 458 ESLERRFGRVGGRIPVTP-SESFQKRISGASEKDIVHSGLDYTMERSA---RAIMKTAMR 291
           ESL+   GR+GG   +TP  + + + ++   ++  V   L YT + ++   R  +  A  
Sbjct: 367 ESLDTVAGRIGGDASLTPIGKQYAQDLANFMDRQRVLWQLRYTNDLASTNKRFSLSEASS 426

Query: 290 FNLGLDLRTAA 258
           FN+   +R  A
Sbjct: 427 FNVWSSVRKRA 437


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = -1

Query: 554 FEWLKNLNHVSYGRLTFKYERESNYHLLESVQESLERRFGRV 429
           F+W K   H++YG +     R+     L+ + E  +    +V
Sbjct: 403 FDWAKKCVHINYGLVQGMSTRKGKAVFLDDIMEVAKEEMHKV 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,549
Number of Sequences: 5004
Number of extensions: 44399
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)