Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_F20
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    32   0.069
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    31   0.21 
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    27   2.6  
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    26   6.0  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 696 NPAYKGPWVHPXIDNPEY 643
           NP Y+GPW  P I NPE+
Sbjct: 342 NPNYRGPWSPPMIPNPEF 359



 Score = 28.7 bits (61), Expect = 0.85
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 696 NPAYKGPWVHPXIDNPEYTPDSNLYKRDEICAVXLDLWQVK 574
           NP + G W    I NP+Y  D +      +  V  +LW ++
Sbjct: 356 NPEFIGEWYPRKIPNPDYFDDDHPSHFGPLYGVGFELWTMQ 396


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 274 LHARTLRTPRYSMSWHSLINHNSLQLI 354
           LH  +L T RY+MSW   + H +L+ I
Sbjct: 161 LHVGSLLTTRYAMSWEQSVYHEALEWI 187


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 61  QNIK*LHTSILSVIPIYXDISTKQRTHIYLHTXCPYESVK 180
           +N+K    S L++  I+   + +  TH +L+  CP E +K
Sbjct: 537 KNLKSFLNSCLTIDTIFRATAAELLTHSFLNQACPTEDLK 576


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 126 KTTDTYLLTHXMSLRIGKIRAKHTHSAKNK*Q*YWNCRRLRNERF*KKNS 275
           +T D  L T  ++L    I+   T S   K   Y   R  R E+F KKN+
Sbjct: 94  RTKDLVLATEALTLEEAFIKDMPTSSTIYKNDRYAGLRWARTEKFRKKNN 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,537
Number of Sequences: 5004
Number of extensions: 37649
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)